RNA id: TU95217


Basic Information

Item Value
RNA id TU95217
length 252
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G70583
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 2270880 ~ 2271131 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGTCACACGGGAgacggagggatggacgtaagtgcaataattactttattaaacaaacaagataaaataaaacaaacaaaacgcgggtaacgcaaaaaacatacaaaaaaaacaaggctaGGATAAATATAAACTGAGAAACACTGACTAACGAAACTAAGATGCGAGGATACAAGAAACACAGAACTAAGAAACTAAGACTAGGATACAAACGGACTGCAGGGATACAAAGATACGAAGGATACagcatac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU95214 lncRNA upstream 32783 2237717 ~ 2238097 (+) True G70580
TU95211 lncRNA upstream 39935 2230475 ~ 2230945 (+) True G70577
TU95209 lncRNA upstream 46727 2223800 ~ 2224153 (+) True G70575
TU95167 lncRNA upstream 77321 2093220 ~ 2193559 (+) False lrrtm2
TU95162 lncRNA upstream 193577 1998119 ~ 2077303 (+) True G70532
TU95223 lncRNA downstream 3297 2274428 ~ 2274856 (+) True G70587
TU95225 lncRNA downstream 28458 2299589 ~ 2299922 (+) True G70588
TU95226 lncRNA downstream 29672 2300803 ~ 2314866 (+) True G70589
TU95235 lncRNA downstream 72228 2343359 ~ 2355896 (+) True G70595
TU95248 lncRNA downstream 110125 2381256 ~ 2384149 (+) True G70606
XM_007257743.3 mRNA upstream 172861 2088920 ~ 2098019 (+) True lrrtm2
XM_007239718.3 mRNA upstream 1298037 957420 ~ 972843 (+) True LOC103041625
XM_022671941.1 mRNA upstream 1358358 899894 ~ 912522 (+) True LOC103041930
XM_007239720.3 mRNA upstream 1393476 867909 ~ 877404 (+) True LOC103042240
XM_022671940.1 mRNA upstream 1416825 845025 ~ 854055 (+) False LOC111193067
XM_022671900.1 mRNA downstream 419607 2690738 ~ 2701134 (+) True gpx3
XM_022671953.1 mRNA downstream 557278 2828409 ~ 2854104 (+) True LOC103025734
XM_022671954.1 mRNA downstream 557278 2828409 ~ 2854104 (+) False LOC103025734
XM_007257738.3 mRNA downstream 586764 2857895 ~ 2866216 (+) True LOC103021672
XM_022671955.1 mRNA downstream 600445 2871576 ~ 2946729 (+) False LOC103025421
TU95147 other upstream 1001476 1268767 ~ 1269404 (+) True G70522
TU94981 other upstream 1265042 1005483 ~ 1005838 (+) True G70385
TU94937 other upstream 1415722 845052 ~ 855158 (+) True LOC111193067
TU94935 other upstream 1430666 794712 ~ 840214 (+) False LOC103042548
TU95246 other downstream 87752 2358883 ~ 2359229 (+) True G70604
TU95561 other downstream 1106553 3377684 ~ 3378610 (+) True G70846
TU95569 other downstream 1141320 3412451 ~ 3574758 (+) False LOC111193071
LOC111193076 other downstream 2685148 4956279 ~ 4957026 (+) True LOC111193076
TU96113 other downstream 2685167 4956298 ~ 4980011 (+) True G71247

Expression Profile