RNA id: TU95239


Basic Information

Item Value
RNA id TU95239
length 301
lncRNA type inter_gene
GC content 0.31
exon number 2
gene id G70598
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 2313796 ~ 2322706 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aaaatgaacattgctgttttattctataaactacagacaacatttctcccaaattccaaataaaaatattgtcatttagagcatttatttgcagaaaatgagaaatgtctgaaataacaaaaaaaaagatgcagagctttcagacctcaaataacacaaagaaaacaacaagttcatattcataaagttttaagagttcagaaatcaatatttggtggaataaccctggtttttaatcacagttttcatgcatcttggcatcatgttctccttcaccagtcttacacactgcttttggata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU95213 lncRNA downstream 76281 2237299 ~ 2237515 (-) True G70579
TU95212 lncRNA downstream 82852 2230491 ~ 2230944 (-) True G70578
TU95208 lncRNA downstream 127821 2184594 ~ 2185975 (-) True G70574
TU95206 lncRNA downstream 215828 2054736 ~ 2097968 (-) True G70572
TU95153 lncRNA downstream 1015767 1297709 ~ 1298029 (-) True G70528
TU95244 lncRNA upstream 8590 2331296 ~ 2346826 (-) True G70602
TU95247 lncRNA upstream 36105 2358811 ~ 2359229 (-) True G70605
TU95271 lncRNA upstream 58611 2381317 ~ 2384167 (-) True G70624
TU95275 lncRNA upstream 80705 2403411 ~ 2403865 (-) True G70628
TU95278 lncRNA upstream 96853 2419559 ~ 2434902 (-) False G70629
XM_022671943.1 mRNA downstream 93432 1998156 ~ 2220364 (-) True LOC103026956
XM_022671899.1 mRNA downstream 1278780 1009886 ~ 1035016 (-) True LOC103042850
XM_022671898.1 mRNA downstream 1307919 988446 ~ 1005877 (-) True LOC103041113
XM_015603201.2 mRNA downstream 1331193 975095 ~ 982603 (-) True rps5
XM_022671944.1 mRNA upstream 112974 2435680 ~ 2488996 (-) True LOC103026657
XM_022671945.1 mRNA upstream 178282 2500988 ~ 2535981 (-) True LOC103022920
XM_007257740.3 mRNA upstream 338805 2661511 ~ 2678905 (-) False dctn4
XM_007257739.3 mRNA upstream 338805 2661511 ~ 2678905 (-) True dctn4
XM_022671946.1 mRNA upstream 381489 2704195 ~ 2742373 (-) True tnip1
TU95334 other upstream 413162 2735868 ~ 2745072 (-) False tnip1
TU95670 other upstream 1025094 3347800 ~ 3353599 (-) True G70924
TU95798 other upstream 1446455 3769161 ~ 3807099 (-) False LOC103042226
TU96020 other upstream 2089242 4411948 ~ 4413011 (-) True G71175
TU96095 other upstream 2559464 4882170 ~ 4884488 (-) True G71235

Expression Profile