RNA id: TU95244


Basic Information

Item Value
RNA id TU95244
length 348
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G70602
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 2331296 ~ 2346826 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gattttgtgctcgtgggctccccctacagttgtagagtgtaataaatgtttcaggcggattagtttctctttctcattttctggctttcacagacattcagtctctttccagcttctgccagagtgtctgtatgttagtttgtaaagaatgaaccagtagtccttgtagaactgttagaactaaaggtcggaaagcaggtcgcagttctcgtgagcgttggtcgcggccgcctcggaaaacttacagagtctggtttgagctcagaggagctccggcacagacacgagagcaccgctattcctcctattacacctcaatgcagcgctgcagtgagtttcaagctgtag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU95239 lncRNA downstream 8590 2313796 ~ 2322706 (-) True G70598
TU95213 lncRNA downstream 93781 2237299 ~ 2237515 (-) True G70579
TU95212 lncRNA downstream 100352 2230491 ~ 2230944 (-) True G70578
TU95208 lncRNA downstream 145321 2184594 ~ 2185975 (-) True G70574
TU95206 lncRNA downstream 233328 2054736 ~ 2097968 (-) True G70572
TU95247 lncRNA upstream 11985 2358811 ~ 2359229 (-) True G70605
TU95271 lncRNA upstream 34491 2381317 ~ 2384167 (-) True G70624
TU95275 lncRNA upstream 56585 2403411 ~ 2403865 (-) True G70628
TU95278 lncRNA upstream 72733 2419559 ~ 2434902 (-) False G70629
TU95291 lncRNA upstream 77210 2424036 ~ 2432368 (-) True G70632
XM_022671943.1 mRNA downstream 110932 1998156 ~ 2220364 (-) True LOC103026956
XM_022671899.1 mRNA downstream 1296280 1009886 ~ 1035016 (-) True LOC103042850
XM_022671898.1 mRNA downstream 1325419 988446 ~ 1005877 (-) True LOC103041113
XM_015603201.2 mRNA downstream 1348693 975095 ~ 982603 (-) True rps5
XM_022671944.1 mRNA upstream 88854 2435680 ~ 2488996 (-) True LOC103026657
XM_022671945.1 mRNA upstream 154162 2500988 ~ 2535981 (-) True LOC103022920
XM_007257740.3 mRNA upstream 314685 2661511 ~ 2678905 (-) False dctn4
XM_007257739.3 mRNA upstream 314685 2661511 ~ 2678905 (-) True dctn4
XM_022671946.1 mRNA upstream 357369 2704195 ~ 2742373 (-) True tnip1
TU95334 other upstream 389042 2735868 ~ 2745072 (-) False tnip1
TU95670 other upstream 1000974 3347800 ~ 3353599 (-) True G70924
TU95798 other upstream 1422335 3769161 ~ 3807099 (-) False LOC103042226
TU96020 other upstream 2065122 4411948 ~ 4413011 (-) True G71175
TU96095 other upstream 2535344 4882170 ~ 4884488 (-) True G71235

Expression Profile