RNA id: TU95246


Basic Information

Item Value
RNA id TU95246
length 347
RNA type TUCP
GC content 0.61
exon number 1
gene id G70604
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 2358883 ~ 2359229 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGCGCACTGAGAGGAACAGCAGTGTAGCGGATTGTAAAGTATGCTCGGTAACCGGAGTCGCTGGGGAGAGTCGCGCGGTTCCGCTGTGTTCTGATAGCCGGTTATAGAGCAGGATGAACGGGTCGGACGGGCTGTGCGGGTCCGGGGAGGTTCTGGTGAACGGCTCGCTGTGTGTGAACCGGACCGGCTCCGCGGTCAGCCCGATAGACGCCGCGTCCTTCATGCACATCTTCCCCACGGTGTACGGCGTGCTGTGCTCCGTGGGCGTGCTCGCCAACAGCCTGGTGATCTACGCCGTGGCCACCTGTAAGAAGAAGATGGTGTCGGATATCTACGTGCTGAACCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU95235 lncRNA upstream 2987 2343359 ~ 2355896 (+) True G70595
TU95226 lncRNA upstream 44017 2300803 ~ 2314866 (+) True G70589
TU95225 lncRNA upstream 58961 2299589 ~ 2299922 (+) True G70588
TU95223 lncRNA upstream 84027 2274428 ~ 2274856 (+) True G70587
TU95217 lncRNA upstream 87752 2270880 ~ 2271131 (+) True G70583
TU95248 lncRNA downstream 22027 2381256 ~ 2384149 (+) True G70606
TU95256 lncRNA downstream 44185 2403414 ~ 2403932 (+) True G70611
TU95251 lncRNA downstream 75750 2434979 ~ 2436078 (+) True G70608
TU95263 lncRNA downstream 139420 2498649 ~ 2504305 (+) True G70618
TU95269 lncRNA downstream 176237 2535466 ~ 2537335 (+) True G70623
XM_007257743.3 mRNA upstream 260864 2088920 ~ 2098019 (+) True lrrtm2
XM_007239718.3 mRNA upstream 1386040 957420 ~ 972843 (+) True LOC103041625
XM_022671941.1 mRNA upstream 1446361 899894 ~ 912522 (+) True LOC103041930
XM_007239720.3 mRNA upstream 1481479 867909 ~ 877404 (+) True LOC103042240
XM_022671940.1 mRNA upstream 1504828 845025 ~ 854055 (+) False LOC111193067
XM_022671900.1 mRNA downstream 331509 2690738 ~ 2701134 (+) True gpx3
XM_022671953.1 mRNA downstream 469180 2828409 ~ 2854104 (+) True LOC103025734
XM_022671954.1 mRNA downstream 469180 2828409 ~ 2854104 (+) False LOC103025734
XM_007257738.3 mRNA downstream 498666 2857895 ~ 2866216 (+) True LOC103021672
XM_022671955.1 mRNA downstream 512347 2871576 ~ 2946729 (+) False LOC103025421
TU95147 other upstream 1089479 1268767 ~ 1269404 (+) True G70522
TU94981 other upstream 1353045 1005483 ~ 1005838 (+) True G70385
TU94937 other upstream 1503725 845052 ~ 855158 (+) True LOC111193067
TU94935 other upstream 1518669 794712 ~ 840214 (+) False LOC103042548
TU94933 other upstream 1518669 805956 ~ 840214 (+) True LOC103042548
TU95561 other downstream 1018455 3377684 ~ 3378610 (+) True G70846
TU95569 other downstream 1053222 3412451 ~ 3574758 (+) False LOC111193071
LOC111193076 other downstream 2597050 4956279 ~ 4957026 (+) True LOC111193076
TU96113 other downstream 2597069 4956298 ~ 4980011 (+) True G71247
TU96114 other downstream 2597069 4956298 ~ 4980011 (+) False G71247

Expression Profile