RNA id: TU95269


Basic Information

Item Value
RNA id TU95269
length 372
lncRNA type inter_gene
GC content 0.58
exon number 2
gene id G70623
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 2535466 ~ 2537335 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTGTTTTGCGTCCCAGCCGGCTGGAGCCAGAGGTCAGGGCTGGCTTCACTTTGACCCAGCTGTGCTTCTCCTTCTCCCATCCATGAGGGCTAGTCCTGTCCTCGCTTTCCCCACAGGAGATCACTTCTTCGTGGGTTTCCTGCGATTCGGCTCTTCCCAGCGTGGTCAGCGTGGTAGCCCCGGGCCCTGACCAGCTGACACCTCTCCTGACGGGGTCGTGCTCCTGCTCCATCCTTTCCTCCTGGCCCGAGGCTGGAGAAAGTTCAGCGGAGGTTATTAGTTTAGGAGTTTTAAGAGCGAGGAAGCGTCTTGTGGTCTGTAGCGTCTCGTCTGCTTGCTTCTCTGCCTGTCCAGGCTTGACCGaagctttgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU95263 lncRNA upstream 31161 2498649 ~ 2504305 (+) True G70618
TU95251 lncRNA upstream 99388 2434979 ~ 2436078 (+) True G70608
TU95256 lncRNA upstream 131534 2403414 ~ 2403932 (+) True G70611
TU95248 lncRNA upstream 151317 2381256 ~ 2384149 (+) True G70606
TU95235 lncRNA upstream 179570 2343359 ~ 2355896 (+) True G70595
TU95304 lncRNA downstream 88827 2626162 ~ 2662604 (+) True G70642
TU95305 lncRNA downstream 121057 2658392 ~ 2705250 (+) True G70643
TU95317 lncRNA downstream 146601 2683936 ~ 2702495 (+) True G70652
TU95326 lncRNA downstream 219808 2757143 ~ 2757834 (+) True G70660
TU95358 lncRNA downstream 226009 2763344 ~ 2763639 (+) True G70676
XM_007257743.3 mRNA upstream 437447 2088920 ~ 2098019 (+) True lrrtm2
XM_007239718.3 mRNA upstream 1562623 957420 ~ 972843 (+) True LOC103041625
XM_022671941.1 mRNA upstream 1622944 899894 ~ 912522 (+) True LOC103041930
XM_007239720.3 mRNA upstream 1658062 867909 ~ 877404 (+) True LOC103042240
XM_022671940.1 mRNA upstream 1681411 845025 ~ 854055 (+) False LOC111193067
XM_022671900.1 mRNA downstream 153403 2690738 ~ 2701134 (+) True gpx3
XM_022671953.1 mRNA downstream 291074 2828409 ~ 2854104 (+) True LOC103025734
XM_022671954.1 mRNA downstream 291074 2828409 ~ 2854104 (+) False LOC103025734
XM_007257738.3 mRNA downstream 320560 2857895 ~ 2866216 (+) True LOC103021672
XM_022671955.1 mRNA downstream 334241 2871576 ~ 2946729 (+) False LOC103025421
TU95246 other upstream 176237 2358883 ~ 2359229 (+) True G70604
TU95147 other upstream 1266062 1268767 ~ 1269404 (+) True G70522
TU94981 other upstream 1529628 1005483 ~ 1005838 (+) True G70385
TU94937 other upstream 1680308 845052 ~ 855158 (+) True LOC111193067
TU94933 other upstream 1695252 805956 ~ 840214 (+) True LOC103042548
TU95561 other downstream 840349 3377684 ~ 3378610 (+) True G70846
TU95569 other downstream 875116 3412451 ~ 3574758 (+) False LOC111193071
LOC111193076 other downstream 2418944 4956279 ~ 4957026 (+) True LOC111193076
TU96113 other downstream 2418963 4956298 ~ 4980011 (+) True G71247
TU96114 other downstream 2418963 4956298 ~ 4980011 (+) False G71247

Expression Profile