RNA id: TU95271


Basic Information

Item Value
RNA id TU95271
length 1273
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G70624
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 2381317 ~ 2384167 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TAAATTATACCAACAGCAGTGTTTAATTGTATAGAACGTTTTACAGTGAGTGCAGTTCTAAAACTCAGGGTCCTGTTTCACAACACAGAACGGCCACAGTTCTCCTCCACATATTACTGAAACAGTTAGTGAGATAACAGCATTACATAAACAAACCCGAGTCAAATGACCTCCTCTCTGGCCAAAACACACATCTTGTGCACAAGAGCCATAAAACAAGCTCTCCGGTCGTTTCAGCGGGCAGACCTGTGGTCAGTGCATGGCTCACCACTCGTGCACCACTGCCACGAGCACTTCTTCTAAATCACCATGTCCCTGTAGGGTGTTATGGGTAAATCAGAGCTGCTAGgatttattaataaagtttgGGATTGAGCTTTTAAAGCTAATTGTAAAAACATTTACCTCCATCATGAATGTAAATGTCATGGTAGAATATTTAGGTTTCAGTGAttttttaggcccaatcccatttcactacttacccctaccccttgatTTCAAGTTTAACCCTTCACTTTggaacagagttataaggggaaggggtgaaatcttTCTGCAACCGGGCAGCACATCATCAGATACACATGAACCACAGTTACAtcatatacaaacacaaaacacacaaatccAGCACTTTAGATTAGGCCACAAACCTGGTCAACACAAGAGATGGCATATCACTACAGATGGGTGTTGTAAttggGCTTATCAATTAATACCAGTCAAATATTTGGATAGACTTTTAATTTagtgctttttctttattttaaaaaggttttgctttgtagattaatgctaaagtcacccaaactatgaagaataAACCAAAGTagacacctcttgcttagaaaaaagtgtttgagagcatcagttaaagtaaagtagtgaagaggtagagttacaggtatacagtgaatagtgaatatttgagtaatgttctaatccagattatgagaagcaactacttaacttatgtatgaattctaccagtcaggttgtaaggagcagaaaagccactccactgaagtgctgCATTATCAGGAtgagttttagtaaagtttctccagcactaaggctgggtgcagcagcattagcattagccgctaacaacagcactagctctttcgctgtttagGCAAGCCAACGCTAATTGGTTGAGCAGGGATATGGATGCGGCAACAGTGAGATTGGGACGAGATCAAACATGGAACAGAACAAAATATAGGGATATAATTGAGAATTTACTTTATTCcagtaattcaataaaaca

Function

GO:

id name namespace
GO:0010035 response to inorganic substance biological_process
GO:0010038 response to metal ion biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU95247 lncRNA downstream 22088 2358811 ~ 2359229 (-) True G70605
TU95238 lncRNA downstream 34465 2311285 ~ 2346852 (-) True G70597
TU95244 lncRNA downstream 34491 2331296 ~ 2346826 (-) True G70602
TU95239 lncRNA downstream 58611 2313796 ~ 2322706 (-) True G70598
TU95213 lncRNA downstream 143802 2237299 ~ 2237515 (-) True G70579
TU95275 lncRNA upstream 19244 2403411 ~ 2403865 (-) True G70628
TU95278 lncRNA upstream 35392 2419559 ~ 2434902 (-) False G70629
TU95291 lncRNA upstream 39869 2424036 ~ 2432368 (-) True G70632
TU95292 lncRNA upstream 39869 2424036 ~ 2455464 (-) False G70632
TU95293 lncRNA upstream 39869 2424036 ~ 2455464 (-) False G70632
XM_022671943.1 mRNA downstream 160953 1998156 ~ 2220364 (-) True LOC103026956
XM_022671899.1 mRNA downstream 1346301 1009886 ~ 1035016 (-) True LOC103042850
XM_022671898.1 mRNA downstream 1375440 988446 ~ 1005877 (-) True LOC103041113
XM_015603201.2 mRNA downstream 1398714 975095 ~ 982603 (-) True rps5
XM_022671944.1 mRNA upstream 51513 2435680 ~ 2488996 (-) True LOC103026657
XM_022671945.1 mRNA upstream 116821 2500988 ~ 2535981 (-) True LOC103022920
XM_007257740.3 mRNA upstream 277344 2661511 ~ 2678905 (-) False dctn4
XM_007257739.3 mRNA upstream 277344 2661511 ~ 2678905 (-) True dctn4
XM_022671946.1 mRNA upstream 320028 2704195 ~ 2742373 (-) True tnip1
TU95334 other upstream 351701 2735868 ~ 2745072 (-) False tnip1
TU95670 other upstream 963633 3347800 ~ 3353599 (-) True G70924
TU95798 other upstream 1384994 3769161 ~ 3807099 (-) False LOC103042226
TU96020 other upstream 2027781 4411948 ~ 4413011 (-) True G71175
TU96095 other upstream 2498003 4882170 ~ 4884488 (-) True G71235

Expression Profile