RNA id: TU95328


Basic Information

Item Value
RNA id TU95328
length 241
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G70662
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 2569887 ~ 2616400 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cacggtatccagggtaatgtcagcataccaccaagaaggaccaaccacatccaacaggattaactgtggacgctgtaagaggaagctgtctgaaagggatgttcgggtgctaacccagattgtatccaaaaaaaacataaaaccatggctgatcaaatcacggcagaattcaatgtgcacctcaactctcctgtttccaccagaactgtccgtcaggacaataaattattgtgctctaaaa

Function

GO: NA

KEGG:

id description
ko04710 Circadian rhythm

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU95292 lncRNA downstream 114423 2424036 ~ 2455464 (-) False G70632
TU95293 lncRNA downstream 114423 2424036 ~ 2455464 (-) False G70632
TU95278 lncRNA downstream 134985 2419559 ~ 2434902 (-) False G70629
TU95277 lncRNA downstream 134985 2432450 ~ 2434902 (-) True G70629
TU95291 lncRNA downstream 137519 2424036 ~ 2432368 (-) True G70632
TU95344 lncRNA upstream 22162 2638562 ~ 2703705 (-) True G70666
TU95353 lncRNA upstream 56739 2673139 ~ 2701134 (-) False G70672
TU95354 lncRNA upstream 74355 2690755 ~ 2701134 (-) True G70672
TU95352 lncRNA upstream 75528 2691928 ~ 2701134 (-) False G70672
TU95350 lncRNA upstream 76165 2692565 ~ 2701134 (-) False G70672
XM_022671945.1 mRNA downstream 33906 2500988 ~ 2535981 (-) True LOC103022920
XM_022671944.1 mRNA downstream 80891 2435680 ~ 2488996 (-) True LOC103026657
XM_022671943.1 mRNA downstream 349523 1998156 ~ 2220364 (-) True LOC103026956
XM_022671899.1 mRNA downstream 1534871 1009886 ~ 1035016 (-) True LOC103042850
XM_022671898.1 mRNA downstream 1564010 988446 ~ 1005877 (-) True LOC103041113
XM_007257740.3 mRNA upstream 45111 2661511 ~ 2678905 (-) False dctn4
XM_007257739.3 mRNA upstream 45111 2661511 ~ 2678905 (-) True dctn4
XM_022671946.1 mRNA upstream 87795 2704195 ~ 2742373 (-) True tnip1
XM_022671950.1 mRNA upstream 147745 2764145 ~ 2816534 (-) False anxa6
XM_022671948.1 mRNA upstream 147745 2764145 ~ 2816534 (-) True anxa6
TU95334 other upstream 119468 2735868 ~ 2745072 (-) False tnip1
TU95670 other upstream 731400 3347800 ~ 3353599 (-) True G70924
TU95798 other upstream 1152761 3769161 ~ 3807099 (-) False LOC103042226
TU96020 other upstream 1795548 4411948 ~ 4413011 (-) True G71175
TU96095 other upstream 2265770 4882170 ~ 4884488 (-) True G71235

Expression Profile