RNA id: TU95334



Basic Information


Item Value
RNA id TU95334
length 642
RNA type TUCP
GC content 0.57
exon number 5
gene id tnip1
representative False

Chromosome Information


Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 2704195 ~ 2745072 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


GTGGAATTTCCCCGGTTACGCCGCGTTTCACGGCTCGGATCGCGATTCGCTGCGACGCACGGCGACGACAGGGAAGCATGTTAAGCGAGTAGGCGGATATGGACGGAAAGGGCCCGTATCGGATCTATGACCCCAGGTGGGAGCGAGAGTCAGGCCAAAGAGGAGGCCAGCAGCTATCGGCAACTCCTGGAGGAGAACAGTGTCCTGAGAGAGCGTATGAAGGGCCTGAAGAGCCTGGGAGACCTGCTGGAGGAGTCTCAGACCGAGGCGTCTAAACTGCGGAAGCGCGTGGAGGAGCTGGTCCGGGATAACGAAGCTCTGAAGTCCTCCACCTCCAGCTACGCTTCTAATGTGTGTATGGGAGCGCCTGTTCAGACGGACACACAAGGTCATGGGAAGCTTCTCAGTCACCCTGCATCCGTCAGAGCTGACCCTCGCGAGTGTTTGACTGTAAAAAGCGTTCAGCCCGAGGCAACCgaGCCGTCCTCTCAGTTTGAACTGGTGAACATGGAGGACAAGACGGCCACAGAGACTCAGACGGTGAGATGTGGGGATGTTTGGGAGGGTCTGGGAAGGGATCTTTTAGTGTGTCGGTGTTCTTTTAGTATGTTTCGGAGAGCATATAGAAAAGACCCTCACGCT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU95344 lncRNA downstream 32163 2638562 ~ 2703705 (-) True G70666
TU95353 lncRNA downstream 34734 2673139 ~ 2701134 (-) False G70672
TU95354 lncRNA downstream 34734 2690755 ~ 2701134 (-) True G70672
TU95352 lncRNA downstream 34734 2691928 ~ 2701134 (-) False G70672
TU95350 lncRNA downstream 34734 2692565 ~ 2701134 (-) False G70672
TU95355 lncRNA upstream 12071 2757143 ~ 2757834 (-) True G70673
TU95376 lncRNA upstream 21533 2766605 ~ 2766880 (-) True G70691
TU95390 lncRNA upstream 104878 2849950 ~ 2850374 (-) True G70703
TU95415 lncRNA upstream 134852 2879924 ~ 2880124 (-) True G70728
TU95417 lncRNA upstream 137410 2882482 ~ 2882965 (-) True G70730
XM_007257740.3 mRNA downstream 56963 2661511 ~ 2678905 (-) False dctn4
XM_007257739.3 mRNA downstream 56963 2661511 ~ 2678905 (-) True dctn4
XM_022671945.1 mRNA downstream 199887 2500988 ~ 2535981 (-) True LOC103022920
XM_022671944.1 mRNA downstream 246872 2435680 ~ 2488996 (-) True LOC103026657
XM_022671943.1 mRNA downstream 515504 1998156 ~ 2220364 (-) True LOC103026956
XM_022671950.1 mRNA upstream 19073 2764145 ~ 2816534 (-) False anxa6
XM_022671948.1 mRNA upstream 19073 2764145 ~ 2816534 (-) True anxa6
XM_022671949.1 mRNA upstream 19073 2764145 ~ 2816533 (-) False anxa6
XM_022671951.1 mRNA upstream 19450 2764522 ~ 2816534 (-) False anxa6
XM_022671952.1 mRNA upstream 30171 2775243 ~ 2816535 (-) False anxa6
TU95670 other upstream 602728 3347800 ~ 3353599 (-) True G70924
TU95798 other upstream 1024089 3769161 ~ 3807099 (-) False LOC103042226
TU96020 other upstream 1666876 4411948 ~ 4413011 (-) True G71175
TU96095 other upstream 2137098 4882170 ~ 4884488 (-) True G71235
trnaw-cca_42 other upstream 2178928 4924000 ~ 4924071 (-) True trnaw-cca_42

Expression Profile