RNA id: TU95467


Basic Information

Item Value
RNA id TU95467
length 2463
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G70770
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 2947441 ~ 2949903 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

taaagtcagtccactgaagtacagagttatacaggagtctcagtttagttctccagcactgaggtggcagcagtattagcattagctgctaactgcgctaagcgctagctcttccgtcgctcagaggtgagtattatcgatctgtagcctgctgctaaccctggctagcactgctggagcagcataagcattagccactaaccatgctaagcgtaGCTCTTTCGCCACTCAGTTGCGAGTATATTGGgctgtagtttgtgtgtttgatgtgttaaaacaagctatgtgggacgaaccgctagctaatatcaccctagcttaccggaacactcagtgtagcactcagtgtagcgctgtcgggtgacatttactagcgctaaccgcggctagcagttagctgcaaatgctaatgctactgcacttggccttagtggaaatctgaaaatctaagcactttactcacccaaatcaagagttttcaagagagaaatgcGTGTATTTTAAAATCCAGCACTTTAAAGAGTTTACTTCAGACTTTTATCTACTACCGAACtgcatatgtgttccttcatagtatttttaagtctttaatattaatctacaatgcagtaaATCATACAAATGaataacaaatattaatgacaatgtgtatccaaacttttgactggtactttacaTCCTAAAacaatgtgtaataatgtgtattgtTGTGGAAAAGTTTTTGCATATACTCCAAACAATCATTCAGAGTGGGTGTTTGGTTTGGAACATACTATTCAGTGTACTATTTACTCACAGTTTACTTTTATTAACTATCCAAATTCCAACAGTgaagctaccaccaccatgtgttACAGTATCTGAGCTTTATAAGGAATCCTTATATGGATATTTAGCTTCTTTGGGACGTGCCAAAGTCATGGGATACTGGAAACAACTGTATAGGTCTGGACTGGTAACGTTCTCTTACACCAAACCCACTCTGAGTAACTTTGCTCACATTTTACCCCTTTAATTAGGCTGAAATCTGGAATATTTGGACGAATTACCCGGCTCAGTAGGAAAGCACAGAGACTCTGAACcataagcaacaaaaaaaaaagcactaaacCAACTTCCATCAGAGACAGAACTACAGTAATTCACCTGTGTGTGATGATTTCCAGTTGTGTTCTTTAAAGTGCAGCATGCCTGTTATGGAAGGCTATTGAAAGACCCCTTATCCTTTTATATCTCACCTCTCCGTCACTGCGAATGGAGaatcaataaatgaataatcaGCATGTAGATATCCTGCAGTCCTTACATCAGATCTTACATCAGTCTCACACAGCCGTGAATCAATCAAACAGGATACAAAGACATCCAGTAAAAACCTTTGTCTTTTTGAACATAATACATTTATgtggatgattttttttactttaaatagtaCTGAGAGATGGTGCTTTATATAACTAAAAAtagggctccgagtggtcccgCAGACTAAGACGGgcgattgctggttcgaatcccggtcatgcagcttgccatcagctgccagtgCCCTAATGGCGtgcttttccctcatcactcctaaggtgatgtcgatcagcacaaggcgtctgtgagctgatgtatcagaaccgagttgcgctttcctccgagcgttagcgctgtgcaGGCCAGTGGATACTTTAAAGATCAATTAGCCCatatgtgtaaatatgtttttaaaaaaggcaaAGGCTTTCACAGAGTGTCCTAATTTTCTAAAtgttcatatgactgtatgagTTTGAATTCACTTCATCATGAATATctaaacacacactttacagTATTGAAGCAAAGGAAACGTGtctaataaaacagatttttaacaGGTCTGTGCAAATGGGATGGactcttagaaaaaaaatccagcaggACAAATTCcctttaatgaaaataatatccCTTTAAATCCGACCGGAACACGGAATAATCTCTCAGCTGTTCTTATGCATTCGCTTTACAGGATCAGAcgaaatataatatattcattcacaCAGAAATGAAAGTGGGACACTCTTAGCGTCCGCCAGCATCGTCTTTCAGTGTCAGATCACTCCTTTAGAGTCTGTCCAGTTTCAGTAATAGAGTCCAGGGCTGTCCAGTTCTGGTCCCAGagagttcagcacagttttTGGTTAGAGTTCCTTGTCCGAACACTTGTACTGAATTTAATTCACTCATTCTGCAGTGGAGCAAGATGCCTTATATTCACTTTCTATGGAAACAGGCAGCAGGACTGTGGGAAGAAAGCAGGCATTGTGTTGTGTCACAGCTAGAGCTGGGTAATGTTCTCAATACCTGCTTTTAAACCCTTAGTGACCCTATCAATCATCTGTTAACTAATTAATCAGCAGGTCAACCTGGAGCTTACTGTGAGCACTatccattttttatataaaaaaaaaaaaaattagccaaATTGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU95425 lncRNA downstream 467 2945157 ~ 2946974 (-) True G70738
TU95423 lncRNA downstream 3834 2943353 ~ 2943607 (-) True G70736
TU95422 lncRNA downstream 5805 2941053 ~ 2941636 (-) True G70735
TU95420 lncRNA downstream 27056 2920042 ~ 2920385 (-) True G70733
TU95417 lncRNA downstream 64476 2882482 ~ 2882965 (-) True G70730
TU95468 lncRNA upstream 1670 2951573 ~ 2951917 (-) True G70771
TU95466 lncRNA upstream 4709 2954612 ~ 2956174 (-) True G70769
TU95495 lncRNA upstream 133073 3082976 ~ 3083205 (-) True G70795
TU95510 lncRNA upstream 160902 3110805 ~ 3115995 (-) True G70809
TU95513 lncRNA upstream 166981 3116884 ~ 3117089 (-) True G70812
XM_022671952.1 mRNA downstream 130906 2775243 ~ 2816535 (-) False anxa6
XM_022671950.1 mRNA downstream 130907 2764145 ~ 2816534 (-) False anxa6
XM_007257737.3 mRNA upstream 8746 2958649 ~ 2982646 (-) True rmnd5b
XM_022671901.1 mRNA upstream 32144 2982047 ~ 3019753 (-) True LOC103025117
XM_007257736.3 mRNA upstream 73516 3023419 ~ 3027693 (-) True LOC103047641
XM_007257732.3 mRNA upstream 348307 3298210 ~ 3317552 (-) False tmem65
XM_022671966.1 mRNA upstream 348307 3298210 ~ 3317552 (-) True tmem65
TU95334 other downstream 202369 2735868 ~ 2745072 (-) False tnip1
TU95670 other upstream 397897 3347800 ~ 3353599 (-) True G70924
TU95798 other upstream 819258 3769161 ~ 3807099 (-) False LOC103042226
TU96020 other upstream 1462045 4411948 ~ 4413011 (-) True G71175
TU96095 other upstream 1932267 4882170 ~ 4884488 (-) True G71235
trnaw-cca_42 other upstream 1974097 4924000 ~ 4924071 (-) True trnaw-cca_42

Expression Profile