RNA id: TU95510


Basic Information

Item Value
RNA id TU95510
length 1905
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id G70809
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 3110805 ~ 3115995 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttgacATAAATTCTCTTTCTAAACAATATCTCTTTCACAGTttatattttgctgtttattttgatttcttattttatttttctctaaaaATGAACAAGCAGTGAGTgttatgataatgatgatgtagCACAAGTAGGTTACAGTATGATATAAGATATATTTGCATTGCTTAGTTGCTGATTGATCATGCATTCACTGAAGAGACTAAAGTGCAGAACGTTGGGCTCTAAAACAGTCCTAAGACTATTTTTCTCATATTGCATTTTAGCGGGAGGTAATCTCCCGCTGAGAATAACCATTCAGTGCTGGTTCCCAGTGAGTTATTACATTCGCTAATCAACATTTCTTGCTTACAACTTACACAGGCTCACTTGATTGAACAAGCAAGCATATATAGCCCCATAGAAAGGGTAGGtttgggcccaatcccattttacatTCTGATTCTTAGAGGAGTAGTGTGTGCCAATTCCTTTTTTtcgatagaggggtagggtgtcctgattgtTGCTGGGATGGAGGAGTACAGTGTcacgattcttgttgggatagaggggtaatGTGTTCCAATTCTTGTTAGGATGTCCCTAATTCTTGTTGGGAAAGAAGGGTAGGGTGTTCCAATgtttgttgggatagaggggtaagtTGACCCAAATTCTTGTTGGACATAGTAAGGTAGGGTGTCATGCTTCTTGTTGGAATAAGTATTGAGTTCAACCACTTCCTCTAGTAACTGGGTTCCAAAAACAAGCTTCAGAGCTTTAATTgagaaatgggactgggccttTGTTTGCAGGCAGAAAGCAGCTGCTGCAGAGTTTCAAACTCGTTAACTAAACTCGTTAAAAGGGTTTATTGGTGTCTATGGGCCGAAGGAGTGCATGATTCAAGCTTCATAACGTGTTGAAGAAGCTCCAGCATTGAATGACAGGAACAGACTGGCTTCAACTAGCACTGTAGCCAACTGTTCTCCCAGCATATCAATGTAGCATTGGCTCTTAGCACATGCACCCATAGCACTGCATGGCGTTTGGCACACAAGACTACCACAGTGTATATATTCATTTATCTCTATATTTATACATAGCCCTGAAAAGTGAGCAAGACTACGCAGATTCCACTGCTCCTGGCTGACCTCTAGTGCAAAGTCAGAGTATTGCAataatattttctctttttttcctataTGCATGAGCACATACAGTAAGGTGGGGAAAGCATGATTCAGTCAGTTTTCATTACAAAGCCTATATAACATACTTTTATATGTGCGCCTTTATACTATATGAGGTATAGCATATACATGGTTAGAAGGGATGCTGATGTCATGCTGCAATTGGAAGTTAATAAACTCATGCAAACAGGAAGTCTTTACATTAAAGTCCTTATTTCACTTTTGATCACCCATCCTGCAGTGTATCTGCACGGCACATGTCTGtgcatttcattttcaaatactCTTCATCCCACCAGCTAAGCCAACTCTAGGGTCAGTTGTGGCAACAGGGGTGCTACAGGACAGGGCTTAGGGggctttgtttttttactcCGCCAGTCCTGTATTGGATAAGAAGTAGGCAGTACAAAAATCAAGAAATTCTGGACATTTGTGACGGTGTAAGGAAGACGTGGACATCAGGTTTTGGCCACACATTATGGTCAGAGCAGGAAAAACCTCTGTTATTCAGCCACCTGCACGCCTGCACAGTTATCTTTACTCTCCGATGCTATCGCTAAATACTCCgccctgcaaacacacacacacacacacacaaacatacacaccagatTAAGAGTTACTGGTTAGACAAAAGCAGCTTAATGTATGGtaaaaattactattttattcagACCAGATCAGAAACTGTAAGTACTGTATAATAAGATAGgaaggggtttcta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU95495 lncRNA downstream 27600 3082976 ~ 3083205 (-) True G70795
TU95466 lncRNA downstream 154631 2954612 ~ 2956174 (-) True G70769
TU95468 lncRNA downstream 158888 2951573 ~ 2951917 (-) True G70771
TU95467 lncRNA downstream 160902 2947441 ~ 2949903 (-) True G70770
TU95425 lncRNA downstream 163831 2945157 ~ 2946974 (-) True G70738
TU95513 lncRNA upstream 889 3116884 ~ 3117089 (-) True G70812
TU95668 lncRNA upstream 161481 3277476 ~ 3291961 (-) True G70923
TU95669 lncRNA upstream 164161 3280156 ~ 3353599 (-) False G70924
TU95673 lncRNA upstream 189524 3305519 ~ 3306018 (-) True G70926
TU95674 lncRNA upstream 193457 3309452 ~ 3309851 (-) True G70927
XM_007257736.3 mRNA downstream 83112 3023419 ~ 3027693 (-) True LOC103047641
XM_022671901.1 mRNA downstream 91052 2982047 ~ 3019753 (-) True LOC103025117
XM_007257737.3 mRNA downstream 128159 2958649 ~ 2982646 (-) True rmnd5b
XM_022671952.1 mRNA downstream 294270 2775243 ~ 2816535 (-) False anxa6
XM_022671951.1 mRNA downstream 294271 2764522 ~ 2816534 (-) False anxa6
XM_007257732.3 mRNA upstream 182215 3298210 ~ 3317552 (-) False tmem65
XM_022671966.1 mRNA upstream 182215 3298210 ~ 3317552 (-) True tmem65
XM_007257731.3 mRNA upstream 207903 3323898 ~ 3335786 (-) True rnf139
XM_007257730.3 mRNA upstream 220214 3336209 ~ 3346476 (-) True tatdn1
XM_022671968.1 mRNA upstream 246576 3362571 ~ 3407431 (-) True mtss1
TU95334 other downstream 365733 2735868 ~ 2745072 (-) False tnip1
TU95670 other upstream 231805 3347800 ~ 3353599 (-) True G70924
TU95798 other upstream 653166 3769161 ~ 3807099 (-) False LOC103042226
TU96020 other upstream 1295953 4411948 ~ 4413011 (-) True G71175
TU96095 other upstream 1766175 4882170 ~ 4884488 (-) True G71235
trnaw-cca_42 other upstream 1808005 4924000 ~ 4924071 (-) True trnaw-cca_42

Expression Profile