RNA id: XM_022671963.1


Basic Information

Item Value
RNA id XM_022671963.1
length 6208
RNA type mRNA
GC content 0.54
exon number 21
gene id LOC103024487
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 3121918 ~ 3292475 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctctccattctttATCACTCTgtttactcactcactccctttctccatccctccctctctctgttcccAATATATCCCTCTCTCGGTTTCTTTCTATTATCCATCCTCGGTTTCTcggtgcgtgcgtgtgtgtatgagatgcgttaataatgaaaatatcGTTTCGGACTTACTGAGCGCGAGCGCGCGCTCGACTTCGATTCTGTTTGTGCGTGCGCGCGCCTGCGTGAGTGCGTGTACACGGCTGCGTgtatacgagtgtgtgtgtgtgtgtgtatgtgcgtttgcgtgtgtttgagtgtgagtgtgtgtgcgtgcgtgcgtgtgtcaCGTGCCGACATGGGGCATTTTTTTGCAGGCTGGCCGAGCCGCCTACATGCTCGCGCTGAGCGCCGCGGTGGCTCTGCCTGCAGCCCTGATGCCACTTCTCCGCGCGAGCCGTCAGACTAGCCGCTGAGGTCCATGCCGCTGGATCATGTCCTATGTGTCTTCACAAGatggaaggtgtgtgtctccGTGTTCCCGGCCTCACACTCCTCTGAATGGCCACGCCCACGACTCCCCCGGCTGGAGCCGTCCGCTCCGCGTCCGAGACGGAGACCAGTTCTACATGCTGGACCAAGAAGAGgttcaTCCTCTGCTTATGAGCGACCGGCGCCCTGTCTCCCACCGCACCAAACTGCTGCGCAGGACCGTCTCCGTACCTGTCGATAGCAGACCCCACCCCGAAtcagAGCACGCTCGTGCTCGCAGAAAGAGCTTTGCCACAGTGAGGCAGAGAAGCATGGAAACTCCGCCCACTGCTCCTCCCCAGACATTTCGCCAATCCagcTTTCTTAGCCGCCGTCTGAAAAGCTCAATTAAGCGAGCGAAAAGCCAGCCCAAACTTGATCGTACCGGAAGCTTCCGCCACATGATTCTCCCACGATTCCGCAGTGCTGACCAGGAGAGaacGCGtctgatgcagagctttaaggaGTCCCACTCCCATGAGTCTTTGCTGTCCCCGAGCAGCGCGGCCGAGGCGCTGGACCTCACGCTGGACGAGGATGCCATCATCAAACCCGTCCACTCCAGCATCCTCGGCCAGGAGTACTGctttgagGTAACAACAGCCTCGGGCACAAAGTGTTTTGCCTGCCGTTCGGCAGCTGAGAGGGACAAGTGGATAGAGAACCTGCAGCGAGCTGTTAAACCCAACAAGGATAACAGTCGACGTGTGGACAATGTTCTCAAGTTGTGGATCATCGAGGCGCGGGACCTCCCCCCTAAAAAGCGATATTACTGCGAGCTGTGTCTGGACGACATGCTGTACGCCCGCACCACCAGCAAGCCTCGCACCGACACCGTGTTCTGGGGCGAGCACTTCGAGTTCAACAACCTCCCCGCCATCCGCAGCCTGCGCCTGCACCTCTACAAGGAGACGGACAAGAAGAGACGCAAGGAGAAGAGCACGTACCTGGGCCTGGTCAGCATCCCCATCTCCAGCATCACTGGTCGGCAGTTTGTGGAGCAGTGGTACCCGGTCATCCAGCCCAGCGTTCTGGCTAAGGGTGGAGGTGTGGGCAGCGGCAAGGTCATTAACGCTTCACTGCGGCTCAAATCCCGCTACCAGACCATGAGCATCCTGCCCATGGAGCTGTATAAGGAGTTTGCGGAGTACGTGACCAATAATTACCGCACTCTCTGCGCCGTGCTGGAGCCGCTGCTGAGCGTGAAGAGCAAGGAGGAGGTGGCCTGTGCCCTGGTGCACATCCTGCAGAGCACTGGCAAGGCCAAGGATTTTCTGTCAGACATGGCACTGAGTGAGGTGGATCGCTTTATAGACAGAGAGCATCTGATCTTCAGGGAGAATACACTGGCCACCAAAGCCATAGAGGAGTACCTCAAACTTGTTGGACACCGCTACCTTAAAGACACCATTGGTGAGTTTATTCGTGCACTGTACGAGTCGGAGGAGAACTGCGAGGTGGACCCTATGAGAACTCCGCCCTCCATGCTCCCCGACCACCAGGCTAACCTACGCATGTGCTGCGAACTTGCACTCTGCAAGATCATCAACTCCCACTGtgtgtTTCCACGGGAGCTGAAGGAAGTCTTCGCGTCATGGCGCGTGCGCTGCGCTGAACGAGGGCGTGAGGACATCGCAGACCGGCTCATCAGTTCCTCGCTGTTCCTGCGCTTCCTGTGCCCTGCCATCATGTCTCCATCGCTGTTCAACCTGACGCAGGAGTACCCGTCTGAGCGCACGTCCCGCACCCTCACGCTCATCGCCAAGGTGGTGCAGAGCCTGGCCAGCTTCTCCAAGTTTAGCGGTAAGGAGGATCATATGATGTTTATGAATGAGTTTCTGGAGATGGAGTGGGGCTCCATGCAGCAGTTCCTCTATGAGATCAGTAACGTGGAGTGCGGCAGCAACGCCCCCGCCTTCGAAGGGTACATCGACCTGGGCCGTGAACTCTCCATCCTGCACAGCCTGCTCTGGGAGGTCATGGCTCAGCTAAGCAAGGATGCGATTCTAAAGCTGGGGCCTTTGCCTCGATTGCTGAATGACATCAGCGTGGCCCTGAGGAACCCCCAGCTACACCGGCAAGCCAGCCACCAACCACCCGAACGACACCTCACCCGCCCGCCATTTAGCCGCCCATCCACCAATGACTTTCAGAGTCTGATGATGAGAGAACTGAACAGttCTATAGATATCTCTCGCCTGCCTTCTCCCACGGCGGGTCTCTCTGGAAGTGGCGCTCTCTCTCACCCAGGAATGGCTGCTTTTGAGAGAGATCATCGTGGCAACAAAGACGTGTTCTATGTGACACGCCCACCGCTAGCCCGCTCAAGCCCCGCCTACTGTACCAGCAGCTCTGACATCACTGAGCCAGACCCAAAgGTGCTGAGTGTGAATAAGAGTGTATCCATGATGGACCTGCAGGATTCCCGAATCAACAGCATTTCTAACCTGCACTCTGTAAACGACATGCTGAACTCGTCGCAGGGTTCCATCGCAGGCCTGGGCAGCTTCGGGCAGATGGGCGGAGCACCTCTCCGGGTGGGCGGCCGGGTCTCGGCGGGTTCAGGGGGCTCCAGCATGTCAGGCGGTCTGCGGCTGAGCCACTCCGGCGGTTTGGCCACAGACTCGCTctcccagcagcagcaggccgCCGCTGCCGCCATGCACGTCCCGCTCTCCTTCCAGAACCCTCTGTTCCACCTGGCCTCGGACGGGCCTCAGTACCACACGCCGCCCCACGCCCCgcacgcccctccaccgctgcTTCTGGCCCCAGAGCCCGAGAACGGCCACGTGGGCTTCGGCATGCCGGCCTTCGGCCACGGTGGCTTCTCCCGCAGCGAGGACCTCTCAGCCCTGCGCACGCAAAACAGCCTGGTCCAGCCCAGCATCGTCCACTCGCACAGCTACAGCGATGACTTCACCCGCCACAACCAGGCCGACTACGCCCGCAGACAGCTCTCCCTGCAGGTGCAGGAGAATCTTCAGCAGCAGGTGTTGATGGGAATGGCCCCTCAGACTGCTACAGGCACCGGTACACCAGCTTCAGTCGCCacaccccccaccaccatcCACCCGGTGCGCCAGGCCTCCATGGCCCCGGCCCCGCCGCAGCGCGTCAAGCCCCAGCCCTCCCACCAGCTGTCCGTCAGCTCAGCTGCTAACTCCACCCCTCCAAAGGTCCGCCCCCAGAGCGGGAACCTCCTCCAATCACCCGAGTCCAGTTTCGGGGCGAGGCCGATGCCACGGCAACAGCTGTCTGTTAAGGACAGCCCCGCCCCCGGGCTCCCGCACCAGTCTAGCACTGCCAGCGAAAACCAGCCGCCACAGGGGGGCGCTACTGAGAACACGGAGAATACATCGAGTGATACGCCTGCTAAAACCGCTACTCAGACCAATCAACAGCACCTACTGAAACCCAATACTAACAAACAGGGCTCTAAGTCTCCCTCCACTCTGAACCCACCTACCCCTGCGTCTGAGCGGACTGTGGCCTGGGTGTCCAACATGCCTCACCTGTCTGCAGATATCGAGAGCCTGCGAGTGGACAGAGAAGACCTGAAACTGAAGGAGCACTCCAAGAGCATGGACGAGTCTCGGCTGGACCGGgtGCGGGAGTACGAGGAGGAGATCCACTCTCTGAAAGAGCGTCTGATGATGTCTCACCGTAAGCTGGAGGAGTACGAGCGGCGGCTGCACTCGCAGGAGCAGCAGACCAACAAGATCCTGCTGCAGTACCAGAGCCGGCTGGACGACAGCGAGAGGAGGCTGCGGCAGCAGCAGATGGAGAAGGACACGCAGATCAAAGGCATCATCAGCAGGCTGATGGCGGTGGAGGATGAGTTGAGAGGGAGTGGTGTTCCCGACCTCAAATCACGAATATTTACAGGAGaGCCAATCTACGGTGGTCACACCGGAACATGATTGACCACAGCAGCACGAAAGGACACGCGACTGGTCCGCCGTCGGTCCAGGAGCCTCTCTCTTgtgtctgattggctgagagaggagagaggaaagagagagagagagaggaagagcatCACTCCCGACGCATCACGCCTCTCCAAACGAAAAAGCACACACTCATTGATAGAATCTGCGTGTCTCTCGCCcctctttcctctttctttctctccctctctttttgttttctctttattgAGCCAAAATAATGACAATCAGCTCTTTTTTGTACGTAGGGGAGTCACAGTTTTGAGGCTGTTGCTCTTGTATAAGACTCTATGACTCTATGGCCTTCGCATTCAGATCTTTATTACGAAGAAAAATGTCcgcaaagagagaaaaagagagggagagagagatagagagagagggacttCGCTCATTAATTAATCCTTCACTTTCCACCTACGTCGCACGCCCcagacactctctctctcttgctctccccTATCTCTCCCTCCTCGCCCTCTCTCAGCAGGAGTATCCGTCGATCTCAGCATGATGGCCGTAGAGAGAGGCTGTGTGTTGGTCTCTTGTGTGTGCGTGGTCTCTTCTTAATGACTACATAACCCACAAGCCTCCTCTTCCTAATAATGACTCAATAACACTTCTTGGGTTTTCGGTTTCtttcgtttttttgttttatcttttggtcagattgtattttttttttgtttgcttttgtttgtttttttcttatatcaagccttttcaaaactttttaaaggagGTGTGGTCTTTTCTGAGCCAATCAGATGTTGCCATACTGCTCAGAAGCCCCTCCCCTCGCCGCCGGGTGGGTGGAGCCTCTTCTCTGTGCCTAAAGAGCTCTATACAAAACaggggattaaaaaaaaagaagaagaaaaataaactttattaacACGCAGGAGCACACGGGACACTCTCTCTACCTTCCCCCCCCCGACGCTCCGGAGTCTGTTTACCTGTACAGGAGCGAAGAGTTCCGTCTCTGATTGGACTTTTGCTGTTGCTGCTTCTGAGGACTTTTCAAGGATCCGCATCCCCTCATCTCATCGACTGGACACCGAAACAAGCCGAGAGAACAGagcaaatgtgtgtgtatgtgtgtgtgtatgagtctgtgtgtgcgtgtgtgtttatgtgtaagagtgtgtgtgtgtgtgtgtgtgtgagggtgtgagtTGATAGAAAAGATGACCTACTTGGTTCACTTCTACAGAAGTCCAGAAAGAGCTCATTTTATTTGATCACAGCTTATTTTCTTGTGAtctcagaataataaaagttgttttcttgTGATGAATTCCTGTAAACTAATAGTAACAGTTTTTAGagattattatataaaacattttttttcttgagaAACTTGAATCTTGAGAAAAGTCGTTTTATCAtaagaaataatttattatctTGAAAGATATCTTAAAAGAAccccattttttaaaaagcaccaTTCCTTATCTCAATACCATTAAAGCACCATTTGTTTTCTCTGTAAAAATGCAATTATTATGAGAAACATATTTGAATAATTGAATTGTTGAGAAAAATACTGTTCCTTATCCTAAGAACAGCATCATTATTTTTTCTTGAGGAAAaacataattccttatgtggAGAAAAGCATGATTCATTATCCTGTGAAAATTACAATTCCTCGTCTCGAGAAAAGCGATTTTAATAACCAATTCAATATCTTgaaaaatttatataatttattatataatgaaaagcactatt

Function

GO:

id name namespace
GO:0046580 negative regulation of Ras protein signal transduction biological_process
GO:0031235 intrinsic component of the cytoplasmic side of the plasma membrane cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K17631 SYNGAP, RASA5; Ras/Rap GTPase-activating protein SynGAP

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU95477 lncRNA upstream 64956 3046392 ~ 3056964 (+) True G70779
TU95430 lncRNA upstream 159810 2958702 ~ 2962110 (+) True G70742
TU95427 lncRNA upstream 165738 2954496 ~ 2956182 (+) True G70740
TU95426 lncRNA upstream 172015 2947454 ~ 2949905 (+) True G70739
TU95403 lncRNA upstream 174820 2946839 ~ 2947100 (+) True G70716
TU95530 lncRNA downstream 5358 3293459 ~ 3322968 (+) True G70820
TU95531 lncRNA downstream 17432 3305533 ~ 3306021 (+) True G70821
TU95564 lncRNA downstream 111242 3399343 ~ 3458582 (+) True G70848
TU95572 lncRNA downstream 124350 3412451 ~ 3574758 (+) False LOC111193071
TU95570 lncRNA downstream 126402 3414503 ~ 3414915 (+) False LOC111193071
XM_022671961.1 mRNA upstream 8286 3095884 ~ 3113634 (+) True LOC103046819
XM_022671960.1 mRNA upstream 39981 3058526 ~ 3081939 (+) True LOC103047122
XM_007257735.3 mRNA upstream 42088 3058524 ~ 3079832 (+) False LOC103047122
XM_022671957.1 mRNA upstream 175191 2873193 ~ 2946729 (+) False LOC103025421
XM_007257729.2 mRNA downstream 59667 3347768 ~ 3353595 (+) True ndufb9
XM_022671972.1 mRNA downstream 121569 3409670 ~ 3414354 (+) True LOC111193071
XM_022671974.1 mRNA downstream 132139 3420240 ~ 3439155 (+) False LOC103043978
XM_022671973.1 mRNA downstream 132376 3420477 ~ 3439155 (+) True LOC103043978
XM_022671979.1 mRNA downstream 635871 3923972 ~ 3935104 (+) True LOC103032643
TU95246 other upstream 762691 2358883 ~ 2359229 (+) True G70604
TU95147 other upstream 1852516 1268767 ~ 1269404 (+) True G70522
TU94981 other upstream 2116082 1005483 ~ 1005838 (+) True G70385
TU94937 other upstream 2266762 845052 ~ 855158 (+) True LOC111193067
TU94933 other upstream 2281706 805956 ~ 840214 (+) True LOC103042548
TU95561 other downstream 89583 3377684 ~ 3378610 (+) True G70846
TU95569 other downstream 124350 3412451 ~ 3574758 (+) False LOC111193071
LOC111193076 other downstream 1668178 4956279 ~ 4957026 (+) True LOC111193076
TU96113 other downstream 1668197 4956298 ~ 4980011 (+) True G71247
TU96114 other downstream 1668197 4956298 ~ 4980011 (+) False G71247

Expression Profile