RNA id: TU95530


Basic Information

Item Value
RNA id TU95530
length 2736
lncRNA type inter_gene
GC content 0.37
exon number 3
gene id G70820
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 3293459 ~ 3322968 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACActtggttaaaaatacacacagatacagtaaGTACCTGATCAATCAGCTTCAATATCAATAATTCCTCCAGAACCAGATGATTGAGATCCTTCAAAACAGTCGAGCACATCAGGTGAGACGTGAGTCAAAGGATACGGAGTCTTTAAATATCGACCACATGAGGGAAAAACGCCATCAACAGCGTCTCATCACCTACGAGTTAGGagttattttttgcttttttgagaCGTCTGCACTTGTGCCGGCTTTCCATAACCAGATAAAGCTTAATCCTCGCCTGTAAAAGCTTTTCATTAGGATACAGCCACTGGCAAGGGAATTAGGAGCATTCTGTGATAAAAATGCAGCATGTTGATGATGCAAATTCCTACTGATGTCatacaaacatttatataaaaaagaaaacaagaaaacacgTAATGAGATGACGTCAGTGAGATGATCAGTGCTAGAATTTTAGCTCTTCAGACACAAAGTAGGAGCAAGAATGATGTATTTTAAATCGAAAATACATCTGAGCCTAATCTGTATCCAGAaaactaaattattaatatacatcatatgtccaaaagtatttagacaccccttctaatacCCCCCCACCCCTCTCCAAAAGtgttggaacagtgaggccaatccctttatttctgacgtagaataataaatatgagacaaaagatcaacatttcagtttttatttccaagtatttacatctggatttGATGCACAGTTTAGAAGATTCTGCACTGTTAGTCTGAacccacacatttttttgtgagcaaaagtattggaacggATAAACTAAAGTGAATTACTAGTGAATAGACTGACTAAGCATTCTTCTTTTCTTATGCCGTTTTAGGCTGTAAGCTCTCAAAatccgaggaaaacagcaaaacaacagtaatcggccctttaatcaggcattttaatggcttttaaaagggaaaataagagtgtttttccgggattaaaagcgtgcattcagctgtaactggaaatatctgcgctgcaaaactgtgctggagtGAGGAACAGCTTTCCAAATGTGTGTTTACTAGCATGTCCCCATCCATGTGGTTACCTCCTGCCCCCGCTCACGCGCCCCCTCCCCCTCTCGCtactcaggcagcagcagcctgtcactcacacagacacagagacagcgctgtgtatctacttcttgtgtcaagaatccaaacactgcaacatgacgtgtttgatttaattgcctgtaacgtcctgtgatgtgactattgcacatgcacacattacgatgacgatgcttaaacgatagtTTATGCAACCCTAACTGGGAGTGTATTAAATTCACCTTTATTAAAAGCTGGTGCAGACATTATTCATACAAATGCACTGAGCAATACAATGGGACTCTCATTCCAGTGCCAAGCATCATCtggatagaggggtataaatcccCCCACcttttgagctgtggagcagtggaactgtgtaaTTTGGAATGATGGAGGTCCATCCAGTATTTTGGGAAGAATTGGAGCGTATCTGTATCAACTTTAATATCATTCCTTAATCCACACAACAATGTTCGAACATCTAGTGTAAAGCCTTTccaaaagagcagaaactgttactccaacaaaaggaGTATTACAAAATATTTCGTACTGAACTCTGGAGGAGCAGGTGTCTATAAACTTTTGGACATATGgtgtatgtttatataaaactatagtGTTTATAAGATCACATCCCCACATTGAAAACAAAATGCATCTAATTTACATGACACATATATGGACATCCTTTCTACACTAATTAACTATATTACATCAACACAACAggcttttctatttatttatttattaattaattgagaactttccttcttttttttgggCTTAGGGTTCCAGTGAATATATCAGTCATATTTAAAATACAGTGTGAaaaagtaggcctgtcacaataattacattattgatttaTCATATAATAAATGGACACTACCTATATAATATTAGATAATCttgatattgtctattgtgtttatttaaatgtttgttcacatatataacagagaACAGTATTGAAGCCAGTCATGCTAaaaaagaagcggtggctgacttcagatgtatcggaggaagcatgtgttagtcttcaccctcctggtgtgttggagcatcacgagtgatagggggagtcctagtagtgggtaattggccatgtaaattggggagaaaatgaaaaaaaaagtaggaaaaaaaatagaaaaagaaaaaacctatgattgttttaaatgttgttgtatttaaaagagtatgattgctttgttatgctatacTTTTATCTAGGGCTGcagctaatgattattttggtagtcgattaACCCGGcgattatttttcagattagtcAGCGTTTATTTCTGCCACATCCTTCATCTCTTAAAACAACAGAACAGATTTTAAGgtatttaaatgtctggatgttgtttaaacgtggtactgatatttagtgagtaaatgtgtaatctgttgtgtgtgggcacttttggagagacagactaagttgagtgtgaCCTGTGTGATTGAGCCATTTACTCATCTCCCATCGCACTTCTGTCCCCGTcattttgtgtaatgcagtacagttaaaaattaacgattagtcgacaattaaatttatagtcgacaaatttaaataatcgacattgtcgattatatcgattAATCGTTACAGCCCTACTATTATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU95522 lncRNA upstream 984 3230072 ~ 3292475 (+) False LOC103024487
TU95528 lncRNA upstream 16937 3274595 ~ 3276522 (+) True G70819
TU95477 lncRNA upstream 236495 3046392 ~ 3056964 (+) True G70779
TU95430 lncRNA upstream 331349 2958702 ~ 2962110 (+) True G70742
TU95427 lncRNA upstream 337277 2954496 ~ 2956182 (+) True G70740
TU95564 lncRNA downstream 76375 3399343 ~ 3458582 (+) True G70848
TU95572 lncRNA downstream 89483 3412451 ~ 3574758 (+) False LOC111193071
TU95570 lncRNA downstream 91535 3414503 ~ 3414915 (+) False LOC111193071
TU95587 lncRNA downstream 136987 3459955 ~ 3460502 (+) True G70859
TU95589 lncRNA downstream 137730 3460698 ~ 3478336 (+) True G70860
XM_022671963.1 mRNA upstream 5358 3121920 ~ 3288101 (+) True LOC103024487
XM_022671962.1 mRNA upstream 8732 3121918 ~ 3284727 (+) False LOC103024487
XM_022671964.1 mRNA upstream 8732 3230283 ~ 3284727 (+) False LOC103024487
XM_022671965.1 mRNA upstream 16048 3121920 ~ 3277411 (+) False LOC103024487
XM_022671961.1 mRNA upstream 179825 3095884 ~ 3113634 (+) True LOC103046819
XM_007257729.2 mRNA downstream 24800 3347768 ~ 3353595 (+) True ndufb9
XM_022671972.1 mRNA downstream 86702 3409670 ~ 3414354 (+) True LOC111193071
XM_022671974.1 mRNA downstream 97272 3420240 ~ 3439155 (+) False LOC103043978
XM_022671973.1 mRNA downstream 97509 3420477 ~ 3439155 (+) True LOC103043978
XM_022671979.1 mRNA downstream 601004 3923972 ~ 3935104 (+) True LOC103032643
TU95246 other upstream 934230 2358883 ~ 2359229 (+) True G70604
TU95147 other upstream 2024055 1268767 ~ 1269404 (+) True G70522
TU94981 other upstream 2287621 1005483 ~ 1005838 (+) True G70385
TU94937 other upstream 2438301 845052 ~ 855158 (+) True LOC111193067
TU94933 other upstream 2453245 805956 ~ 840214 (+) True LOC103042548
TU95561 other downstream 54716 3377684 ~ 3378610 (+) True G70846
TU95569 other downstream 89483 3412451 ~ 3574758 (+) False LOC111193071
LOC111193076 other downstream 1633311 4956279 ~ 4957026 (+) True LOC111193076
TU96113 other downstream 1633330 4956298 ~ 4980011 (+) True G71247
TU96114 other downstream 1633330 4956298 ~ 4980011 (+) False G71247

Expression Profile