RNA id: TU95561


Basic Information

Item Value
RNA id TU95561
length 255
RNA type TUCP
GC content 0.61
exon number 2
gene id G70846
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 3377684 ~ 3378610 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGCCCAGCTCCGAAAATCTCacggctgctgagccacgcccccggactcctgccgtCTCAGACTCTGCACATGCTGACGTGCGTGCTgcacaagcctccgtgtctgcagaagctgctccagcctccgtgtctgcagaagctgctccagcctccgtgtctgcagaagctgttcaagtctccgtctctgctgaagctgttcaagcctccgtgtctgcagaagctgctccagcctccgtgtctgcagaagctgttcaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU95530 lncRNA upstream 54716 3293459 ~ 3322968 (+) True G70820
TU95531 lncRNA upstream 71663 3305533 ~ 3306021 (+) True G70821
TU95522 lncRNA upstream 85209 3230072 ~ 3292475 (+) False LOC103024487
TU95528 lncRNA upstream 101162 3274595 ~ 3276522 (+) True G70819
TU95477 lncRNA upstream 320720 3046392 ~ 3056964 (+) True G70779
TU95564 lncRNA downstream 20733 3399343 ~ 3458582 (+) True G70848
TU95572 lncRNA downstream 33841 3412451 ~ 3574758 (+) False LOC111193071
TU95570 lncRNA downstream 35893 3414503 ~ 3414915 (+) False LOC111193071
TU95587 lncRNA downstream 81345 3459955 ~ 3460502 (+) True G70859
TU95589 lncRNA downstream 82088 3460698 ~ 3478336 (+) True G70860
XM_007257729.2 mRNA upstream 24089 3347768 ~ 3353595 (+) True ndufb9
XM_022671963.1 mRNA upstream 89583 3121920 ~ 3288101 (+) True LOC103024487
XM_022671962.1 mRNA upstream 92957 3121918 ~ 3284727 (+) False LOC103024487
XM_022671964.1 mRNA upstream 92957 3230283 ~ 3284727 (+) False LOC103024487
XM_022671965.1 mRNA upstream 100273 3121920 ~ 3277411 (+) False LOC103024487
XM_022671972.1 mRNA downstream 31060 3409670 ~ 3414354 (+) True LOC111193071
XM_022671974.1 mRNA downstream 41630 3420240 ~ 3439155 (+) False LOC103043978
XM_022671973.1 mRNA downstream 41867 3420477 ~ 3439155 (+) True LOC103043978
XM_022671979.1 mRNA downstream 545362 3923972 ~ 3935104 (+) True LOC103032643
XM_022671980.1 mRNA downstream 576398 3955008 ~ 4105963 (+) True LOC103042852
TU95246 other upstream 1018455 2358883 ~ 2359229 (+) True G70604
TU95147 other upstream 2108280 1268767 ~ 1269404 (+) True G70522
TU94981 other upstream 2371846 1005483 ~ 1005838 (+) True G70385
TU94937 other upstream 2522526 845052 ~ 855158 (+) True LOC111193067
TU94935 other upstream 2537470 794712 ~ 840214 (+) False LOC103042548
TU95569 other downstream 33841 3412451 ~ 3574758 (+) False LOC111193071
LOC111193076 other downstream 1577669 4956279 ~ 4957026 (+) True LOC111193076
TU96113 other downstream 1577688 4956298 ~ 4980011 (+) True G71247
TU96114 other downstream 1577688 4956298 ~ 4980011 (+) False G71247
TU96122 other downstream 1585092 4963702 ~ 4967907 (+) True G71249

Expression Profile