RNA id: TU95570


Basic Information

Item Value
RNA id TU95570
length 385
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id LOC111193071
representative False

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 3409670 ~ 3574758 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctctctttctctctttctctctctctctctttctctcttaggCTGGCCAACGCTCATCAAACCTCTCCTCTCAGAGCTGTTGGCCCATCAGAACGGAAAACGGCAGATTCATCGCCTTCGTCGCTTTGTGCAGTCCGAGAACATGACTAGTGAACATACTGTGCAAGACTGGCTCAACCAGGCTTCAGAAGAACAGCTGAAAAATCTTCCCGAAAAGCTGGAGAGGGTGAACCTGCAACACCTGTCTTTAAAAGTGGACcacaaaataaagagatttataCAAGAAGCCAAGTACTGTGACAACAGCatcatgtaaaatatattattaGTGTAATACTGAACTTAATACTGATGTTGGTAGATGAGTTTCAATAGAAAAACAGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU95530 lncRNA upstream 91535 3293459 ~ 3322968 (+) True G70820
TU95531 lncRNA upstream 108482 3305533 ~ 3306021 (+) True G70821
TU95522 lncRNA upstream 122028 3230072 ~ 3292475 (+) False LOC103024487
TU95528 lncRNA upstream 137981 3274595 ~ 3276522 (+) True G70819
TU95477 lncRNA upstream 357539 3046392 ~ 3056964 (+) True G70779
TU95587 lncRNA downstream 45040 3459955 ~ 3460502 (+) True G70859
TU95589 lncRNA downstream 45783 3460698 ~ 3478336 (+) True G70860
TU95612 lncRNA downstream 140601 3555516 ~ 3556070 (+) True G70880
TU95616 lncRNA downstream 183169 3598084 ~ 3599084 (+) True G70883
TU95630 lncRNA downstream 265087 3680002 ~ 3682460 (+) True G70892
XM_022671972.1 mRNA upstream 149 3409670 ~ 3414354 (+) True LOC111193071
XM_007257729.2 mRNA upstream 60908 3347768 ~ 3353595 (+) True ndufb9
XM_022671963.1 mRNA upstream 126402 3121920 ~ 3288101 (+) True LOC103024487
XM_022671962.1 mRNA upstream 129776 3121918 ~ 3284727 (+) False LOC103024487
XM_022671974.1 mRNA downstream 5325 3420240 ~ 3439155 (+) False LOC103043978
XM_022671973.1 mRNA downstream 5562 3420477 ~ 3439155 (+) True LOC103043978
XM_022671979.1 mRNA downstream 509057 3923972 ~ 3935104 (+) True LOC103032643
XM_022671980.1 mRNA downstream 540093 3955008 ~ 4105963 (+) True LOC103042852
XM_022671982.1 mRNA downstream 717107 4132022 ~ 4215716 (+) True LOC103045063
TU95561 other upstream 35893 3377684 ~ 3378610 (+) True G70846
TU95246 other upstream 1055274 2358883 ~ 2359229 (+) True G70604
TU95147 other upstream 2145099 1268767 ~ 1269404 (+) True G70522
TU94981 other upstream 2408665 1005483 ~ 1005838 (+) True G70385
TU94937 other upstream 2559345 845052 ~ 855158 (+) True LOC111193067
LOC111193076 other downstream 1541364 4956279 ~ 4957026 (+) True LOC111193076
TU96113 other downstream 1541383 4956298 ~ 4980011 (+) True G71247
TU96114 other downstream 1541383 4956298 ~ 4980011 (+) False G71247
TU96122 other downstream 1548787 4963702 ~ 4967907 (+) True G71249
LOC111193046 other downstream 1564552 4979467 ~ 4980022 (+) True LOC111193046

Expression Profile