RNA id: TU95572


Basic Information

Item Value
RNA id TU95572
length 609
lncRNA type read_through
GC content 0.51
exon number 4
gene id LOC111193071
representative False

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 3409670 ~ 3574758 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTGCTTGCCTTGTGACCCCTGTGAGGTCAACCAGGAAGAGAAAAGGCCATGCACTCGCTTCCACAACCGCGTGTGCCAGTGCAAGCCTGGGTACTTCTGGCACTCGCACTACTGCAAGAAGCACACGGTGTGTTCCTTGGGGGAAGGAGTCAAAACCGAAGGAACTCCAAGCAAAGATACCGTGTGTGAGCCATGCGCGAACGGTCACTATGCCGCCGGACCCGAAGGCAACAAACGGTGTACTCCATACACGACCTGCAAGGGTCAGGAGAAACTGGTGATCAGTGGGACCAATTGGCACGACAATATATGTGTTACCTGTGACAACATCACAACACAAGgcTGGCCAACGCTCATCAAGCCTCTCCTCTCAGAGCTGTTGGCCCATCAGAACGGAAAACGGCAGATTCATCGCCTTCGTCGCTTTGTGCAATCCGAGAACATGACTAGTGAACATACTGTGCAAGACTGGCTCAACCAGGCTTCAGAAGAACAGCTGAAAAATCTTCCCGAAAAGCTGGAGAGGGCGAACCTGCAACACCTGTCTTTAAAAGTGGACcacaaaataaagagatttataCAAGAAGCCAAGTACTGTGACAACAGCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU95530 lncRNA upstream 89483 3293459 ~ 3322968 (+) True G70820
TU95531 lncRNA upstream 106430 3305533 ~ 3306021 (+) True G70821
TU95522 lncRNA upstream 119976 3230072 ~ 3292475 (+) False LOC103024487
TU95528 lncRNA upstream 135929 3274595 ~ 3276522 (+) True G70819
TU95477 lncRNA upstream 355487 3046392 ~ 3056964 (+) True G70779
TU95616 lncRNA downstream 23326 3598084 ~ 3599084 (+) True G70883
TU95630 lncRNA downstream 105244 3680002 ~ 3682460 (+) True G70892
TU95631 lncRNA downstream 105244 3680002 ~ 3682460 (+) False G70892
TU95632 lncRNA downstream 105244 3680002 ~ 3682460 (+) False G70892
TU95747 lncRNA downstream 158864 3733622 ~ 3768722 (+) True G70986
XM_007257729.2 mRNA upstream 58856 3347768 ~ 3353595 (+) True ndufb9
XM_022671963.1 mRNA upstream 124350 3121920 ~ 3288101 (+) True LOC103024487
XM_022671962.1 mRNA upstream 127724 3121918 ~ 3284727 (+) False LOC103024487
XM_022671979.1 mRNA downstream 349214 3923972 ~ 3935104 (+) True LOC103032643
XM_022671980.1 mRNA downstream 380250 3955008 ~ 4105963 (+) True LOC103042852
XM_022671982.1 mRNA downstream 557264 4132022 ~ 4215716 (+) True LOC103045063
XM_022671983.1 mRNA downstream 590296 4165054 ~ 4215716 (+) False LOC103045063
XM_022671984.1 mRNA downstream 731907 4306665 ~ 4339082 (+) True dpy19l4
TU95561 other upstream 33841 3377684 ~ 3378610 (+) True G70846
TU95246 other upstream 1053222 2358883 ~ 2359229 (+) True G70604
TU95147 other upstream 2143047 1268767 ~ 1269404 (+) True G70522
TU94981 other upstream 2406613 1005483 ~ 1005838 (+) True G70385
TU94937 other upstream 2557293 845052 ~ 855158 (+) True LOC111193067
LOC111193076 other downstream 1381521 4956279 ~ 4957026 (+) True LOC111193076
TU96113 other downstream 1381540 4956298 ~ 4980011 (+) True G71247
TU96114 other downstream 1381540 4956298 ~ 4980011 (+) False G71247
TU96122 other downstream 1388944 4963702 ~ 4967907 (+) True G71249
LOC111193046 other downstream 1404709 4979467 ~ 4980022 (+) True LOC111193046

Expression Profile