RNA id: TU95630


Basic Information

Item Value
RNA id TU95630
length 266
lncRNA type inter_gene
GC content 0.45
exon number 3
gene id G70892
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 3680002 ~ 3682460 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGCATTTCTCATCTGTCctgcagcagaaccaatcagagtgcAGGAATATACCAGAAAGAAGCTGCAAGGAAAGACCTCAAAGGAACCAGAGGTAGAAGAAAAcagaaccaatcagagttCAGGAATATACCAGAATGAGGCTGCAAGGAAAGACCTCAAAGGAACCAGAGATAGAAGAAAAagcattTCTCATCCGTCCTGAAGCAGAACCAGTCAGAGGGCAGGAATATACCAGAAAGAAGCTGCGAGGATGATCTCGAAGGAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU95616 lncRNA upstream 80918 3598084 ~ 3599084 (+) True G70883
TU95572 lncRNA upstream 105244 3412451 ~ 3574758 (+) False LOC111193071
TU95612 lncRNA upstream 123932 3555516 ~ 3556070 (+) True G70880
TU95589 lncRNA upstream 201666 3460698 ~ 3478336 (+) True G70860
TU95587 lncRNA upstream 219500 3459955 ~ 3460502 (+) True G70859
TU95747 lncRNA downstream 51162 3733622 ~ 3768722 (+) True G70986
TU95756 lncRNA downstream 64157 3746617 ~ 3747062 (+) True G70993
TU95758 lncRNA downstream 66380 3748840 ~ 3749607 (+) True G70995
TU95759 lncRNA downstream 66380 3748840 ~ 3749403 (+) False G70995
TU95761 lncRNA downstream 83977 3766437 ~ 3766775 (+) True G70997
XM_022671974.1 mRNA upstream 240847 3420240 ~ 3439155 (+) False LOC103043978
XM_022671973.1 mRNA upstream 240847 3420477 ~ 3439155 (+) True LOC103043978
XM_022671972.1 mRNA upstream 265648 3409670 ~ 3414354 (+) True LOC111193071
XM_007257729.2 mRNA upstream 326407 3347768 ~ 3353595 (+) True ndufb9
XM_022671964.1 mRNA upstream 395275 3230283 ~ 3284727 (+) False LOC103024487
XM_022671979.1 mRNA downstream 241512 3923972 ~ 3935104 (+) True LOC103032643
XM_022671980.1 mRNA downstream 272548 3955008 ~ 4105963 (+) True LOC103042852
XM_022671982.1 mRNA downstream 449562 4132022 ~ 4215716 (+) True LOC103045063
XM_022671983.1 mRNA downstream 482594 4165054 ~ 4215716 (+) False LOC103045063
XM_022671984.1 mRNA downstream 624205 4306665 ~ 4339082 (+) True dpy19l4
TU95569 other upstream 105244 3412451 ~ 3574758 (+) False LOC111193071
TU95561 other upstream 301392 3377684 ~ 3378610 (+) True G70846
TU95246 other upstream 1320773 2358883 ~ 2359229 (+) True G70604
TU95147 other upstream 2410598 1268767 ~ 1269404 (+) True G70522
TU94981 other upstream 2674164 1005483 ~ 1005838 (+) True G70385
LOC111193076 other downstream 1273819 4956279 ~ 4957026 (+) True LOC111193076
TU96113 other downstream 1273838 4956298 ~ 4980011 (+) True G71247
TU96114 other downstream 1273838 4956298 ~ 4980011 (+) False G71247
TU96122 other downstream 1281242 4963702 ~ 4967907 (+) True G71249
LOC111193046 other downstream 1297007 4979467 ~ 4980022 (+) True LOC111193046

Expression Profile