RNA id: TU95685


Basic Information

Item Value
RNA id TU95685
length 424
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G70938
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 3414588 ~ 3415039 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gtcgctttgtcgcctctcgcgtgtcgcggcgacaaatcgcgccctgccataggaaatgaatggtcgcctgtcgctttgtcgctttccagtgtgaacgcagggtaaggAGTGCACTTGAATTCTACTCTGTTTTTCTATTGAAACTCATCTACCAACATCAGTATTAAGTTCAGTATTACACtaataatatattttacatgatGCTGTTGTCACAGTACTTGGCTTCTTGtataaatctctttattttgtgGTCCACTTTTAAAGACAGGTGTTGCAGGTTCACCCTCTCCAGCTTTTCGGGAAGATTTTTCAGCTGTTCTTCTGAAGCCTGGTTGAGCCAGTCTTGCACAGTATGTTCACTAGTCATGTTCTCGGACTGCACAAAGCGACGAAGGCGATGAATCTGCCGTTTTCCGTTCTGATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU95669 lncRNA downstream 60989 3280156 ~ 3353599 (-) False G70924
TU95674 lncRNA downstream 104737 3309452 ~ 3309851 (-) True G70927
TU95673 lncRNA downstream 108570 3305519 ~ 3306018 (-) True G70926
TU95668 lncRNA downstream 122627 3277476 ~ 3291961 (-) True G70923
TU95513 lncRNA downstream 297499 3116884 ~ 3117089 (-) True G70812
TU95699 lncRNA upstream 35866 3450905 ~ 3451612 (-) True G70946
TU95701 lncRNA upstream 39838 3454877 ~ 3455224 (-) True G70947
TU95705 lncRNA upstream 42780 3457819 ~ 3458798 (-) False LOC111193045
TU95707 lncRNA upstream 44842 3459881 ~ 3522387 (-) True G70951
TU95712 lncRNA upstream 99999 3515038 ~ 3584641 (-) True G70955
XM_022671968.1 mRNA downstream 7157 3362571 ~ 3407431 (-) True mtss1
XM_022671970.1 mRNA downstream 7161 3362571 ~ 3407427 (-) False mtss1
XM_022671969.1 mRNA downstream 7168 3362571 ~ 3407420 (-) False mtss1
XM_022671971.1 mRNA downstream 7168 3362571 ~ 3407420 (-) False mtss1
XM_007257727.3 mRNA downstream 7178 3362571 ~ 3407410 (-) False mtss1
XM_022671902.1 mRNA upstream 29056 3444095 ~ 3458810 (-) True LOC111193045
XM_022671975.1 mRNA upstream 46198 3461237 ~ 3508996 (-) True LOC103024174
XM_022671976.1 mRNA upstream 218677 3633716 ~ 3641881 (-) True LOC103023864
XM_022671903.1 mRNA upstream 321587 3736626 ~ 3848624 (-) True LOC103042226
XM_022671978.1 mRNA upstream 447079 3862118 ~ 3910529 (-) False LOC103042532
TU95670 other downstream 60989 3347800 ~ 3353599 (-) True G70924
TU95334 other downstream 669516 2735868 ~ 2745072 (-) False tnip1
TU95798 other upstream 354122 3769161 ~ 3807099 (-) False LOC103042226
TU96020 other upstream 996909 4411948 ~ 4413011 (-) True G71175
TU96095 other upstream 1467131 4882170 ~ 4884488 (-) True G71235
trnaw-cca_42 other upstream 1508961 4924000 ~ 4924071 (-) True trnaw-cca_42
TU96400 other upstream 2056627 5471666 ~ 5476375 (-) True G71458

Expression Profile