RNA id: XM_022671902.1


Basic Information

Item Value
RNA id XM_022671902.1
length 1978
RNA type mRNA
GC content 0.43
exon number 10
gene id LOC111193045
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 3444095 ~ 3458810 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCCAGGCTGAAATACAGGCTGAGTGGAGCTCAGAGCCTCCAGCAGCTCAGAGCCGCTCACCTGCTGGTGCTCACCTGGTCTGCGCTCCGGAACCATGGACAGCTCCTCCGGACACCTGGACGCCGCCTCCTTCCTGCAGATCTGGAAGCTGTTCGATGCTCAGGATCGAGGATATATTGAAGGAAAGCAGCTGGATGACTTTGTTGGCCAAATTATGAAGAAATTAGGGAAGAATGTAAGCAAATGGACTTGTTTTTTCTCACAATTGtctgtacacacacagctgGCTACAGTGATTCTTCCAGAGGAGGAGAatttcctgctgctgttccgcAGAGAGACGCCGCTGGACAACAGTGTGGAGTTTATGAGGATCTGGAGACGTTATGATGCTGACAGCAGTGGATTCATATCAGCTGTGGAACTGAAGAGTTTCCTCCAGGACCTGTTTCAGCAGCACAACAAGCACATCACCCCAGAGAAACTGGAGCAGTACACCGACACCATGATGAAAATGTTTGGAAAAAACAAGGATGGCCAACTAGACTTAAAAGACCTGGCCAGAATTCTGTCTTTGAAGGAGAACTTTCTGCTGAAGTTTGAGATGGATGCCtgcagtcagacagacaggaagAGGGACTTTGAGAAGATCTTTGCTCACTATGACGTGagtaaGACAGGAGAACTGGAAGGACCAGAGGTGGATGGATTTGTTAAAGACATGATGGAGCTGGTGAagCCCAACCTGACTGGCGCAGACCTGGACAGGTTCAAAAAGGCCCTGCTCAGCCACTGCGACGTGAATGGAGATGGAATCATCCAGAAGAACGAGCTTGCTCTGTGTCTGGGTCTGAAGCTAACCCCGTAAAGCACAAAGCAGCTTACTGGACCATCCCTGACCTGCACATACAACACTAAATACTCTCacaggctaaccgctagtgctaaCCTTCCATTTAGCGTTTAGAGCAATAAGGGGCTTAAAGACTGGCACTTTGGAGGAAGGACATGAGGCATGGGAGATGCTTACTCAAGGCTTTTACTTGATACttatttaaatcttttaaagtaatatttctatatattctGATAGATtagatcattttaaactgtaaatatgtGCTTTGTTAAGTATTTGGTGTTAACTCACTTAGGGTGTACTAACACTAGGCAATCTGTGCTGTGCCCAGGCATGGTTTGATTGACTAGTGTGAGCACCCCACCAGGAAAACCACCCCCTCTCAGGAGTGTGTACTATGTCACTATGTATGTAACCGTGACTAAGATAACCGTGATTTTTAGCACATACTTTGATTATCTCTGCTTTCATCAAGAAGACATGCttccgagagagggtgcttttcatggtgggggtgctgaattcagcacaacgcCAGCACACCCACTGAGCAGTAAGTGAGGTAAAGGTGCTCAGGCACAGATTGTTTAaatgcagtgtgagtgcaggccagcaGGACAGTGGGGAGGGGGCAGAATTCCGAgcttagtgtgagtacacccttatacgtagagctgggcaatatagtTTAAATACTATATCAGGATATTTaaggacatttttacactacGCAATATTTATTGCAGTGACAAAATGCATTAGCAGTGGAAAAAAAATCGTATTCAAATTAGTATTCAAATACTTTGGTTAATATTCAGTTTTTGCTGCACCTCATCCAATTTAACAgttatttttacactgtaatgaaatgtacagttgagtcagtgttttttaaagcatgATTTGCTTTAAAAAGCATAAGAACATGTATCACaccacaataaaatataatcatattgcccagctctacttaaactcttacctcagtatatgcatgctgttgtttttgttgatttGTTTCTGGTGCTCTTGTTCtgataaacagataaatgatGTATCATTATGCTGATTTAACACTCtgacattataataataataatattttgacAGTGACAGGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU95685 lncRNA downstream 29056 3414588 ~ 3415039 (-) True G70938
TU95669 lncRNA downstream 90496 3280156 ~ 3353599 (-) False G70924
TU95674 lncRNA downstream 134244 3309452 ~ 3309851 (-) True G70927
TU95673 lncRNA downstream 138077 3305519 ~ 3306018 (-) True G70926
TU95668 lncRNA downstream 152134 3277476 ~ 3291961 (-) True G70923
TU95707 lncRNA upstream 1071 3459881 ~ 3522387 (-) True G70951
TU95712 lncRNA upstream 56228 3515038 ~ 3584641 (-) True G70955
TU95723 lncRNA upstream 116751 3575561 ~ 3703751 (-) False LOC103023864
TU95724 lncRNA upstream 139274 3598084 ~ 3599084 (-) True G70965
TU95721 lncRNA upstream 175470 3634280 ~ 3641649 (-) False LOC103023864
XM_022671968.1 mRNA downstream 36664 3362571 ~ 3407431 (-) True mtss1
XM_022671970.1 mRNA downstream 36668 3362571 ~ 3407427 (-) False mtss1
XM_022671969.1 mRNA downstream 36675 3362571 ~ 3407420 (-) False mtss1
XM_022671971.1 mRNA downstream 36675 3362571 ~ 3407420 (-) False mtss1
XM_007257727.3 mRNA downstream 36685 3362571 ~ 3407410 (-) False mtss1
XM_022671975.1 mRNA upstream 2427 3461237 ~ 3508996 (-) True LOC103024174
XM_022671976.1 mRNA upstream 174906 3633716 ~ 3641881 (-) True LOC103023864
XM_022671903.1 mRNA upstream 277816 3736626 ~ 3848624 (-) True LOC103042226
XM_022671978.1 mRNA upstream 403308 3862118 ~ 3910529 (-) False LOC103042532
XM_022671977.1 mRNA upstream 403308 3862118 ~ 3910529 (-) True LOC103042532
TU95670 other downstream 90496 3347800 ~ 3353599 (-) True G70924
TU95334 other downstream 699023 2735868 ~ 2745072 (-) False tnip1
TU95798 other upstream 310351 3769161 ~ 3807099 (-) False LOC103042226
TU96020 other upstream 953138 4411948 ~ 4413011 (-) True G71175
TU96095 other upstream 1423360 4882170 ~ 4884488 (-) True G71235
trnaw-cca_42 other upstream 1465190 4924000 ~ 4924071 (-) True trnaw-cca_42
TU96400 other upstream 2012856 5471666 ~ 5476375 (-) True G71458

Expression Profile