RNA id: TU95747


Basic Information

Item Value
RNA id TU95747
length 744
lncRNA type inter_gene
GC content 0.32
exon number 2
gene id G70986
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 3733622 ~ 3768722 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ataaataaataccacCATCACCACAATTGAAAtggaattttatttatattccaatatttttattttatttcatctttTTAAATTGCGCAGTGTGAACAATCTGTACATGTTTAATTGTATATCACTAAATGGCAGTTTTCTCATTTTAAGTAAAGATGAAAACGTTTCCGCACATCATTCTTTAAAAGGGTCCGTAAACTGATTCTTTACTAAAGACAGTGTTTGTTAGGAATATGTTCAAAACTCTGGGATTCTACATagtaataacaaataaagaacagtggaaaacatttataaatgttcTATACACTTGTTTCGATCTCTTCTCATTCAGCGtattttgtctctttttatgatttttttttcgttgtaaatttaatattaaagactatattaaagttcTACGGGAGCACATGCTAAATTActctataaacaaacaaaaagaaatgttaaacaaaacagaatatgttttatactttagattcttctaagtatcacatttatctttgaggacagattttaatctcagtgtctcttcatgagggagagtcacctggaatagttttctcagtgtcttgaaggaaggagtttctggaggtgctgaacaatagctgctgcttttccttcacgctgtgaagctccagctcatcccaattaaatcacctcaaatctccatctcagatcatcaggtttagatcaggggattggaTCAGGTGGAGGACcaacactttttttaactgttta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU95630 lncRNA upstream 51162 3680002 ~ 3682460 (+) True G70892
TU95631 lncRNA upstream 51162 3680002 ~ 3682460 (+) False G70892
TU95632 lncRNA upstream 51162 3680002 ~ 3682460 (+) False G70892
TU95616 lncRNA upstream 134538 3598084 ~ 3599084 (+) True G70883
TU95612 lncRNA upstream 177552 3555516 ~ 3556070 (+) True G70880
TU95771 lncRNA downstream 73972 3842694 ~ 3844794 (+) True G71005
TU95788 lncRNA downstream 115616 3884338 ~ 3888895 (+) True G71019
XR_002650229.1 lncRNA downstream 187722 3956444 ~ 3957741 (+) False LOC111193074
XR_002650226.1 lncRNA downstream 187722 3956444 ~ 3957741 (+) False LOC111193074
XR_002650228.1 lncRNA downstream 187722 3956444 ~ 3957741 (+) False LOC111193074
XM_022671974.1 mRNA upstream 294467 3420240 ~ 3439155 (+) False LOC103043978
XM_022671973.1 mRNA upstream 294467 3420477 ~ 3439155 (+) True LOC103043978
XM_022671972.1 mRNA upstream 319268 3409670 ~ 3414354 (+) True LOC111193071
XM_007257729.2 mRNA upstream 380027 3347768 ~ 3353595 (+) True ndufb9
XM_022671964.1 mRNA upstream 448895 3230283 ~ 3284727 (+) False LOC103024487
XM_022671979.1 mRNA downstream 155250 3923972 ~ 3935104 (+) True LOC103032643
XM_022671980.1 mRNA downstream 186286 3955008 ~ 4105963 (+) True LOC103042852
XM_022671982.1 mRNA downstream 363300 4132022 ~ 4215716 (+) True LOC103045063
XM_022671983.1 mRNA downstream 396332 4165054 ~ 4215716 (+) False LOC103045063
XM_022671984.1 mRNA downstream 537943 4306665 ~ 4339082 (+) True dpy19l4
TU95569 other upstream 158864 3412451 ~ 3574758 (+) False LOC111193071
TU95561 other upstream 355012 3377684 ~ 3378610 (+) True G70846
TU95246 other upstream 1374393 2358883 ~ 2359229 (+) True G70604
TU95147 other upstream 2464218 1268767 ~ 1269404 (+) True G70522
TU94981 other upstream 2727784 1005483 ~ 1005838 (+) True G70385
LOC111193076 other downstream 1187557 4956279 ~ 4957026 (+) True LOC111193076
TU96113 other downstream 1187576 4956298 ~ 4980011 (+) True G71247
TU96114 other downstream 1187576 4956298 ~ 4980011 (+) False G71247
TU96122 other downstream 1194980 4963702 ~ 4967907 (+) True G71249
LOC111193046 other downstream 1210745 4979467 ~ 4980022 (+) True LOC111193046

Expression Profile