RNA id: XM_022671903.1


Basic Information

Item Value
RNA id XM_022671903.1
length 2872
RNA type mRNA
GC content 0.49
exon number 23
gene id LOC103042226
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 3736626 ~ 3848624 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGTATgtgactgcagtgtgtgtaggtgagtgtgtgtatgtaagtgcAGGTAGACTTCAGTCGCTGAGACGTGTTCATGCGTTACACACAGACTCCACTCAGGTGTGTAAATCATTAAGATGATGTTCGAAAAGCCTGAGCTGAGCAAAAAGAAGCTCATCATTGTAGTTGTTTTGGCTGTTTCTATTGTGACTATCATACTTGGACTGGGTCTGGGACTCGGACTTCAGCTGGAAAGCTGCAGGAACAAAGCCCCGGTGTCGTGTCGGGACCGCTGCTATGAGCCGTATGATTTCGAGTCTCCAGGATGCCGCTGTGATGAGCAGTGCGTTGCCAATAACAACTGTTGCTATGACTTCAAGGACATCTGTCTCCAGCCAACTGAGACCTGGGAGTGCACTACACTGCGCTGTGGGGAGAAGCGTATCTCCAGCAGTAACTGCCACTGCTCTGCTGACTGTCTGAGTGCTGGAGACTGCTGCACTAATTATAACATCGTCTGTAACGGAGCAAAGTCCTGGGTGGAGGATGTGTGTGAGAACACGGAGAGCACCAAGTGCCCCAACAAgtggaagGGGATGTACTCTGAGTCTCATGGATTGGTGGATAACAACATGTACGATCCTGTATTTGATGCTACATTCGGTCTGTCCAATCCTGAGAAAGACAATCCCAGATGGTACCAAGGACAACCGatctGGCACACAGCGATGTATCAGGGTCTGAGAGCAGGAACGTTCTTCTGGCCAGGATCAGACGTGGCCATAAATGAAACTTTCCCAAACTTATATGAGAAATATGATGGACCAGATTTCCTCACTCTGTATCTGGAAGAACCGGATAAATCTGGACACAACTATGGACCTGTCAGTGGAGGGTTGGTCAGTGCCATCCAGGGAGTGGACAAAGTGATGGGACACCTGATGAACGGACTGAAACAGCTCAACCTTCACGAGTGCATCAACATCATTGTTGTAGCTGATCACGGCATGGCTGAAACTAGCTGTGACCGGACGGAGGCGCTGCAGGACCTGGTGGGAGACGTCTCACACCTGTACGTTACTCAAGGTCCATTTGGACGAATCAGAGCAGCAGACAAAACAGTGACCTTGGACGCCGCAGGGCTGGTGGCCAACATGACAtgcaaGAAGCTTGATCAGAAGATAAAGGCCTACTTGAAGTCTCACATGCCAAAACGCTTCCACTATGCAAACAACCGGCGTATAGAGGACGTGAATGTGCTTGTTACCTCACGCTGGCTGTTTGAAAGTTTCCCAGGTGCCCTCACATTCTGCTCTGGTGGAAATCATGGCTATGACAACGATGACTACAGCATGCAGGCTATGTTCTTAGGTTATGGACCCAAATTTCAGTTTCAGACCGAAGTGGAGCCGTTCTCCAACATTGAGCTGTACAATCTCATGTGTGACATAATGGAAATCACTCCAGCCCACAATAACGGAAGTCATGGCAGCCTGAACCACATGCTGCGGACTCCGCCCTTCTCACCACAGCACCCGCAAGAACAAAGCCTCCCCGGCCAGTGTCCTCTGGCCACCCTGGTGCCGACTGATCCACTGGGCTGCTCATGCCCTGCACTGGTACCCAATAACACACACTTAACCATAACTTTCATAAGAAACATTATTCCTCTTGTACTGTACAGGTTTGTCGTCTCCAGCTGGACTCCAGGTGACACTCCCAGCATGTGCTCAGCCAAACTCGCCCAGACtgttctggagagtcctgaaaCGTCAAAACATGGAAAAACTTCACACCCTTTAGGAAAATGTGTTTGTAAAATGGTACATGGATGCatattttgtatgtgtgtgtgtgtgtttgcagaggCTGCTAGTGAGAAGAAACACCTGATGTTTGGGAGACCCCGAGTCCTGCAGTCCCTCTCTGAATACTGTCTTCTGCACCAAGAAGGGTTTATCAGTGCCTACAGCCGAAACACACACATGCCTCTGTGGAGCTCATTTACCGTGGAAAAACcgGCTGGAGGAAGTTCTGACCCTCTGCCAGGAGTGACGGAAGACTGTCTGAGGCCAGATGTTCGAATCCCAGAGGATCAGAGTCCCACCTGTGATCAATACACCAACGCCGGCAACGTCACACATGCCTTCCTGTACCCGCCCAGTCTGAACAGTACAGCAGAAGAACAGTATGATGGGCTGATTCTCAGTAATGTGATTCCGATGTATCCAGAGTTTAAGAAGATATGGCAGTATTTTCAGGACGTCCTGCTGGTAAAGTATTCCTCTCAGTATAATGGGATTAACGTGGTGACCGGCCCTGCCTTCGACTACAACTACGACGGCCACTTCGACACAGCCGAGCAAATTCAAGAgtttgtTACAGGAACTGGCATTCCCATTCCCACTCATTACTTTGCAGTTGTGGCAAGCTGCTTGGACGCGAATCGGCCGGTGACGGACTGCGCGGGAGAATTTTACACCATCTCCTTCTTATTACCTCACAGACCCGACAACTCAGAGAGCTGCATGagtaatcaAGCAGAGTCCACCTGGGTTGAGGACCTGATCTGGTTCCATCAGTCACGCGTAATGGACGTAGAGTGGATCACAGGACTGAGCTTCTTCCAGGACAGCGGTCGCCCGGTTCCTGAGGTCCTGCGGGTGAAGACCCGGCCCACTGCAGCCATTCAGAGAAGAACATGAAGGATGTAATTTACATAATCATGAAAATACACATGAAAttcatgttttaatataaaaccaGGCAAATTTATGGATATataaaattatgtatttaatgCTGCTTACAATCTAAGCAAAATTTGGTTCTTTAAAGTTCTTAGAAAGGGTTATTTGACTTTTAACAAGAGTGGAAACGTTTTGGTTCca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU95739 lncRNA downstream 25489 3690315 ~ 3711137 (-) True G70979
TU95723 lncRNA downstream 32875 3575561 ~ 3703751 (-) False LOC103023864
TU95721 lncRNA downstream 94977 3634280 ~ 3641649 (-) False LOC103023864
TU95724 lncRNA downstream 137542 3598084 ~ 3599084 (-) True G70965
TU95712 lncRNA downstream 151985 3515038 ~ 3584641 (-) True G70955
TU95827 lncRNA upstream 17160 3865784 ~ 3938383 (-) True G71040
TU95864 lncRNA upstream 251606 4100230 ~ 4108878 (-) True G71067
TU95867 lncRNA upstream 257997 4106621 ~ 4108878 (-) False G71067
TU95868 lncRNA upstream 257997 4106621 ~ 4112464 (-) False G71067
TU95886 lncRNA upstream 318762 4167386 ~ 4216646 (-) True G71081
XM_022671976.1 mRNA downstream 94745 3633716 ~ 3641881 (-) True LOC103023864
XM_022671975.1 mRNA downstream 227630 3461237 ~ 3508996 (-) True LOC103024174
XM_022671902.1 mRNA downstream 277816 3444095 ~ 3458810 (-) True LOC111193045
XM_022671969.1 mRNA downstream 329206 3362571 ~ 3407420 (-) False mtss1
XM_022671978.1 mRNA upstream 13494 3862118 ~ 3910529 (-) False LOC103042532
XM_022671977.1 mRNA upstream 13494 3862118 ~ 3910529 (-) True LOC103042532
XM_007236447.3 mRNA upstream 598548 4447172 ~ 4462972 (-) True LOC103026470
XM_022671989.1 mRNA upstream 1109481 4958105 ~ 5013867 (-) True LOC103041488
XM_022671988.1 mRNA upstream 1112965 4961589 ~ 4975625 (-) True LOC111193075
TU95670 other downstream 383027 3347800 ~ 3353599 (-) True G70924
TU95334 other downstream 991554 2735868 ~ 2745072 (-) False tnip1
TU96020 other upstream 563324 4411948 ~ 4413011 (-) True G71175
TU96095 other upstream 1033546 4882170 ~ 4884488 (-) True G71235
trnaw-cca_42 other upstream 1075376 4924000 ~ 4924071 (-) True trnaw-cca_42
TU96400 other upstream 1623042 5471666 ~ 5476375 (-) True G71458
TU96529 other upstream 1980997 5829621 ~ 5841687 (-) True LOC103035656

Expression Profile