RNA id: TU95864


Basic Information

Item Value
RNA id TU95864
length 3405
lncRNA type inter_gene
GC content 0.40
exon number 4
gene id G71067
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 4100230 ~ 4112464 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gTAAAAACAAGTTTGATTCAAAATAAGATGAATCTTTGAGAGTGTGATGAAAACACTCTccttaaacactttttaaaatgggTTTAAAATGGAACAAAGCAAATCTTTAAGCAAGGTCATCACACTGACACCGTTACACGATACCCACGACTCATGGGCAAACACAATAAATGTTCACAAAGTCAatctaaacatatatattaatacatttagcaCCGTCCTATTCCATAAACTTATGAGCATATGTGAACTGGAATGTACAACAGCAGGTAATTCATGAGTCTGATAGGTGAGAAACATCTGTTTTATAAGACGCTTTATAAGACGTTAACGTTGTACCGTATGAACTGAGAAGCATCACACTGCAGAGACACTACCAacgaaacaaaataaataatctgaataaaataaatctgaaggatgaaaattaaaggaaaaaggaaaaaaaaggaaaaaaaaaaaaaaacttcagccaaaatttcttttaaaaaatgaacaaacgTCTGTTCTTTGTCATCATAGTCGAGAGAAACTCTTATCAACATATTTATCTACAAAATCCACTAGAATTATCTTAACATACGTACATGTGATTAATATTATAAACAGGCACTTAATACAGAGGCATCCAGACTCAGGACTTTACACAGGGATCAGAAGAGGGTGAAATGAATCAGTCTGCAGGACCAGATGATATAAAAGCGCAGATTTCATGGGGTTAAATCACAAGTTAGAGCTGATATTATTGAACACATCAAAAAGTGGTCTGTACATGATGGTTGATATGAAAGTTATTTTACAAtgactggaaaaaagagagagagagacagagagagagagagagagagatcgttgctgtccaatgaaaaacaagtatctctatttttatcatttatcactTGTTTACTACATAGTTTGAAAACACAAACTGTTCCTCACACTGTGacacatttcttgatgaatgaaccaatagaaattctcaaaaatgacctgaaataaacgttttttacattgacttaccTCTCtactgtaaagctgctgttttgaagattCTTGTTTtctattggacagcaacaatatagagagagacaaaagatgaatagagagagagacagagaaagagagttcACTGTATTTCAGGCACTTGGATACTTTCACACATTACATCTCACTGCACTGCTCGACCCCAATCACTTCTCTTAATCCCACTCATTCAGCAACACCCGGGGTTCTTCTTTAAAAGGGTCTCAGAGCCCAAAATCTACACATATTACCACAATGTAATGTCATGTATTATAACACCACTGCTCCAAAAAAATTCCACTGTTCAAATTCACACAATTtcaacacttttagtttaatcaaTCAGCCAGGACGTGTTTGGTGTCTAAAGTTTCCTtagaaaagaagcaaaaatgacttttaaataacttttggGAAATGAGagtgcatattttttttcttgaaaggTTCACTAATGATCACATTTACTACTGGCATTTACAGAAGAATATTTTTATCTTGAAACtgataaaattttataaaacttttataaaatacaaCTTAAATTACTATAGAGCATTTACTTCAACTCAGAACACGGTTAAAGCTTTTCTTATCAAGACTTGGATTGtaaatgtgttattaaatatatgtagATTGTAATGGAACACAATATTTGCAAAAGTATTGGtaattttcaaaataaaagtttattttaaaataattttagcttTTTCTGCGGTATCATTTTTTGGGGGTGgcaaatccacctatttctgatatttctGACAATGCTTACAGTGAATGTTACTCATTCAAAATACTCTACCAAAGTTTTTTGAAAGCATAACAGTGTCATAACCCACATAAGCAATGCTAATGTCCTGAGCTCTAGATTTATATATTAGCCTCGTAGCTTCAGCTCAAAGCCAATTCCGACACCAAACATTTCTTGGCTGAGATAAAAGCGGAGATAATTGCTTTAGTTaacttttattagaaacatgctCTCGAGAGGGGGGCTTTTTCATGGCGGGGATTCAGATTTCAGCAcaattttcaaaataaaagttctttaaaaccatttctgctttttctgcggtttaattttttttggggggggggggggggacaaatccacctatgTCTGTCAGACTTTTCTAAAAGCATATCAGTGTCATAACCCACATTAGCAATGCTAATTTCCTGAGCTCTAGATTCctattagcctcatagcttcaGCTCAAagccacttctgacaccaaacaTTTCTCGGCTGATTGACTGCATTTATTAAAGGGAAATCTGTGTTATTGACTGCTTGGCCACAGAGTATTCCTTTAAGGGTTTAAAAAATGGTTAACcagagttaatttttttatttaatagaggTTAATAGATCTTTTCCGGATTTCTTTTCTGACCCCGCCTCCACGTCGATACGCTGCGAGTCTGCCGCTGTATTCCTGGCGACCGcagctcctccagctcctccgcCATGACTGGGTCGTCCGGTTCCACGGGGCGGGGCTGGGGGTAGTTGGGCTGGTAGTAGGAGGGGTACGTGCCATAGCTTCCGTAGGGGTCCTCCTCCCCTCCCTCCTCCTCGGCGCCGTACGTTTGGTACGAGTTTGGTGGCAGTTGGACTATGGGAATATCGCGGTCAGTCACTTCACGGTCAAACTCCCTCTCTGACCACCACCAAGCGGCACGGCACAGAGGCAAATGGACAACgagcccacacacacataacacacacgcacacacacataacacacacacacagacacacccatAGAGTGGACGGAGAGGACACACAAGCACAAGGTTACTGGTGACATCAGTGCacccgcagcagcagcaagcaGCACGTGGAGTTAGaacgagtgagtgtgtgtgtgtgtgtgtgttgtgtgtgtgtgtgcgtgcatttgcgtgtgtgtgtgagtgagtgtgtgagtgtgtattagCTAGATAAGCTCATACATAAACACCAACACATATGATCCCCGTCAGTCAGTACTGAATTAGCAACATGTGGCTGGTTAACAACAATGCAGCcctgtgtgagtttgtgtgtgtgtgtgtgtgtgtgtgtggtaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttaagaaaAAGCCTCCAGGCATCTGCACCATCAACAACCTACacacagagagtgtgtgtgaatggagcCTACTGCTCAGTACTCATTCACAAACTGTATCTGGTCGTcaacCCCAACGTTGTATCCGCAGGAGTTTGGATCACAGTAGCCCGGGGGTCCTGCGGGTCCTACTGGTCCAGGCATGCCCGGCCTGCCCGGGGTCCCAGAGTTACCAGGACGGCCAGCAGGGCCCGGACCACCAGTCCTCCCCTCACCAGGTGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU95827 lncRNA downstream 161847 3865784 ~ 3938383 (-) True G71040
TU95819 lncRNA downstream 288264 3810265 ~ 3811966 (-) False LOC103042226
TU95818 lncRNA downstream 289156 3810265 ~ 3811074 (-) False LOC103042226
TU95739 lncRNA downstream 389093 3690315 ~ 3711137 (-) True G70979
TU95721 lncRNA downstream 458581 3634280 ~ 3641649 (-) False LOC103023864
TU95886 lncRNA upstream 58508 4167386 ~ 4216646 (-) True G71081
TU95991 lncRNA upstream 197823 4306701 ~ 4310021 (-) True G71153
TU95997 lncRNA upstream 218193 4327071 ~ 4333955 (-) True G71156
TU96007 lncRNA upstream 230668 4339546 ~ 4340305 (-) True G71164
TU96025 lncRNA upstream 307684 4416562 ~ 4490878 (-) True G71178
XM_022671978.1 mRNA downstream 189701 3862118 ~ 3910529 (-) False LOC103042532
XM_022671977.1 mRNA downstream 189701 3862118 ~ 3910529 (-) True LOC103042532
XM_022671903.1 mRNA downstream 251606 3736626 ~ 3848624 (-) True LOC103042226
XM_022671976.1 mRNA downstream 458349 3633716 ~ 3641881 (-) True LOC103023864
XM_022671975.1 mRNA downstream 591234 3461237 ~ 3508996 (-) True LOC103024174
XM_007236447.3 mRNA upstream 338294 4447172 ~ 4462972 (-) True LOC103026470
XM_022671989.1 mRNA upstream 849227 4958105 ~ 5013867 (-) True LOC103041488
XM_022671988.1 mRNA upstream 852711 4961589 ~ 4975625 (-) True LOC111193075
XM_022671987.1 mRNA upstream 852711 4961589 ~ 4967939 (-) False LOC111193075
XM_022671990.1 mRNA upstream 894464 5003342 ~ 5013867 (-) False LOC103041488
TU95798 other downstream 293131 3769161 ~ 3807099 (-) False LOC103042226
TU95670 other downstream 746631 3347800 ~ 3353599 (-) True G70924
TU95334 other downstream 1355158 2735868 ~ 2745072 (-) False tnip1
TU96020 other upstream 303070 4411948 ~ 4413011 (-) True G71175
TU96095 other upstream 773292 4882170 ~ 4884488 (-) True G71235
trnaw-cca_42 other upstream 815122 4924000 ~ 4924071 (-) True trnaw-cca_42
TU96400 other upstream 1362788 5471666 ~ 5476375 (-) True G71458
TU96529 other upstream 1720743 5829621 ~ 5841687 (-) True LOC103035656

Expression Profile