RNA id: TU95951


Basic Information

Item Value
RNA id TU95951
length 4962
lncRNA type sense_over
GC content 0.41
exon number 4
gene id LOC103028288
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 4357065 ~ 4441931 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttttagtttgcagtttatatgcatgcactaaatattctgcaatattatttgctgcattatattattttatgctatattatttattttgccacattatgattattctggtatactattatactatattcctgaaatgaattaattattttagttttcctatatcggcaagtatatcgttatcacaaaaataccctgaaatatcgtgatattattttagagccatatcgcccaatCCTACTTACTAATAGATTTTGACCCTAAACTGTATTTCTGACAGATTGTAATTGTCACTGTTTTAATGGCAGTGTATTAGAGAAGGTTGGATAAGTGATAAGTTATGTGATTGTTAACAGATGGGACCATACCAATCAGAGACCAGCTATTCTGACAGATTTCACTCATAAGACCACACTTGCAGAAGGGTTAACCCATTTACAGTGTTTAGCAGTCcagattttacaaatatttttttctcctattctgttttttttacatcctaACCACTCATTCTTGCATTCTGTTCTCTAAGACCAtgctttaatttgattaaatcaTCATCATCCCTTTAATTGCTTATTTTATATTCCCACTCTCTGTGAAGTCTTTAAGAGAGTGGAAGGACAGTAGCTGGGATAAGTTGGAGTCTCACGGCCTGAGCTGTGATTGCTCACAGTAACGTGGCTGTACCACTCAGGCCTTAAAaagtgagtagtgtgtgagtgagccggCGGGGAAGCTTAAGCTAGTCGATGCCGGCGTCCCCTGTGGGTGCGGATAGAGCTGCTCTGTACTGATGCCTTCTCTGCTGTTTGCCTGCCCTGAAAAGCCTTGCAGTGGATCAGTGGAGTGATGAGCTTGGGGGCTGACTTGATTCTCTGCAGTGCATGGTTCAAGTGCAGTTCAGATTAGCATAACTTTCAATTAGCTTATGCTAAATATGATTAAGATAATTTCAGTGTGTCTGTCTTTGCATGGCCTGTTCTTCTAAAATGACCATGTCATTTACGTAATCGCTCCGGTTATGATTAGCTGTCTGTAATTAATAGGGCAGTAGGGGCAATTAAACAATTATGACTAACCatgtttttatctctcttttttctgcatcccagccaatcagattccttTGTCACTTTACCCAAAACTGTGTGATCAGCATGTCTGTGAATGATTATGAGGATTTTTATAGCAGAACTCGTCCGTCTTTTGGCCCCTTTCCCTGCATGGCATACTTTCTATACCCTGGAGAGACATTTTAGTCTTTTTCTGTCATGCTTTCTTTAGCCCTTCTCTGTTTCCCATACGCAGACAAACAACAGCACACATCATTTTTATAACTCTACTAGACTAAACTAGCTCTCTGCATGACTCTGAGCGATTCCTCTAGGACTTCCCAGAATTGATCTATCCATGTGTCTGTCTATGGAGATGTGTTCTTTTATAGCTACTGTTGCAAGCTTGAATAGGTCCTTCAGAATACTGGAAAACATTCTATTGACCTAATATTAAAGCACACAGCTcagataaattattttttatatgattttgtatatatttggatGATAAAAGCCAGGTTTCTATCCATTTGtcagattaaatattaaaagtaaattaagtaagtaaattaaattttcgccaaaaaagaaaaagctggtAAAACCTGGCATTAACAGGTGTTTTTGTCAGGTGTGTAAACACACCCACATTGCGTTCGCATTGTGTTAAGATGCCTCAAACCACTTTCGAAATTGGAATGCTTTTTCCAACACATCATTCTTGTCTAGTCCACCATGATaagttgtgttgtttttatagACGGTAAAGCCAGGATGTTGGGAAAATACTTTGCTAAGCAACTAGTTTGAGCCTGACATGGTGACGtaaccagccaataaaagcagagattttatttagtgttacTCAGAATGTTTAGCAACTAAAATTATTcatctaaaaatagcaaaaaagcaTCCCTCCTCTCGCCTCGCATATAAAGGGAgaagcattgctgaggtaaatttatgattagaaaagTACTAGGTAAATGTTTGGCCAAAATAGcaaacaccatagaaaccatagTAGAACCTTttttgcaacaccttagcaaccagttagcaaagccatagcaaccacctgtggTAACCTTGACAATGACCTGGGATACCTTAGCGATTGGTGTGAGCCATGTtagcaagacaaaaatacactaaatccctatccggacgggtttcgtttctcagggggaagtctatgaaaaatatttcacacctCTACTCAGTGATTGAACTCTGGCCTCTGGActgtaattgaaaaaacaggaggagcagtgagttttttttggctttctctgtcacatgacatcacgttcagtagctcctccatttccactcgctgttgtctTTACAGGGATCTCCATAGaaacgtgcgcccaaagtgtaatcacggtgcatggcagtggacaaatagctattttattaaacacaaggtgACAGTCTGGACGAGAATAAAATTACTGTAGactgtaggtaattcagcctgtaattttttcagagaacgtctgagaaaaacacaaacatggttgttctggacgggaataaaatcacagaggaccctccataaaagagaaaatgaccccagatccccctgagaaactaatcctgtccggatagggctttaaactgtttgtttatgccataaaagtggcaaaataaatgaaaacttgcaaaaaaaattagaattagaaattagaaattacatTTCTATTTATTCCCACAAGCACACAATAAAAAGCTAATAGAAAAGCAGCGCGTTTCATTCTGAGgaaaataacagggttgtaaataggCTTTACATTAAAGTCACATACTTAGAATTTACAAATCacaaaaactataataaatacTAAACAAACGCATTCTTTAGCACCTTTAACATCAGAACCTAAACCACTATCTTGGCTTAAATGGCTCTAAGGCAGCAGATCTCATCCCTGGTCCTGGAGGAGCTTGTGCCCTGCGCATTTCAATGTTTACCCTGCTCCCAACACACCTCATCCAGCTGTTCAGCTCATTAACAGATCCCTCCTGAGATGAAGGTGGCGTGTTTGTGCAGGAAACCAGTAAAACATGCAGGGTGTGGGGTCCTTCAAGACCACCTGTCTTTAAAACACAGAGCACTGCAATAAAATCAGAAAGCAAGCATTGTGCTTCATTGACCTGTGAATTCAAACTCTCATTGGGTTAAATGGGATTTTTACTAGCATTCTGCAAATCCTGTGCAACCTAGCAACAGTACCTTGGAAAGAATTCAGATCAGAGCATGGATAGATCAATTCTCAGTTCCCTGACCTGTTCCTTTCTTTATTCATACTCCTCTTCCTCCCCCATTTTCTCTACCTCTACCTACCTTTCCTACCTCTCTTCTTTTATCCCTAGGTGAAGGGTTGTCTGCGTCCCGCAATTCCCTTCTCAAACTGGGCGGCTCCATTTCAAACCTGTCCCAGAGACGCGAGTCCCGCGTCTCCATGCTCCTGAACCACCTCCTTCCTGGCCCCGCCCACGGCCACTCCCCCAGCCCCTCTCCCCAGAACACCCCGCCGTCCTCTCGGCGCTCTGGCTCCGCCCACAGACCCCCGGTGCACCTGGACATCCCCTCGGTGGTGGTGTCGCCTCCGGTGGAGGACGAGGAGTTCACAGCTTGTGAAGgactgCTGGTGTCTGCTGGTTCTCTCTCTGGCTCTATGGACGCAGGCAGGCCTTCTGAAAACAGATCCAAACCAAACAGCAAAGATGGCAGCACTGTAGATCTCAGCAAGGTGACGCTCTAGAGAAAGGTGTCTTGGTGATGCTTGGCATTGGGCACCTTCAATAATGAGAAGGGTTGTCTGGATAGGTTAACTAGTGGCATATAAATGATGATACTGCGATACTGTGAGTCTGCAATGCTCTGTATTTCACAAGACTATTCTATAAGATACTTCATGGCATCTGTGacactgaagaggataaaatactcctaaataagcaaataccaggaattatggatttattggtgtctgtttaaaaaaaaatgtaactacCAATATTGTTTACAGCAGGTTTACCCACTTCCTTTGATTAGTAAGTCAGATTGGAGgggtcttagggagtttagagcaccaataaataataatcaataaaagcATTTGACACAGAAACCTGTATTAAACAGCATCTACACTGAGcatggccaactgtgctctctcagactctggctgctgatggcaagcagcatgatgcAGAACTTATAGTGAAATGCCTTAGGCTTTTGGATCACATAAAGGCCACCTGTTTATATTTTGCACTAAAACAGGAGCCTATACgatatatttattattctaatgaactacaatcagttttaaacagttttatagATACGTGTAGACAtagatgcattttttttcttgctcttcCCCTCGCTGTCtcttttcacactctctctcctacacacacacacacacacacttctcaccTTCCTCTCTCAGGTGGATATGAACTTTATGAGGAAGATTCCTCCAGGGGCGGAGGCATCAAATGTGCTGGTGGGTGAAGTGGACTTTCTGGATCGACCAATCATAGCCTTTGTTCGTCTCTCACCTGCTGTGCTGCTTACAGGACTCACAGAGGTGCCTGTCCCGaccaggttcTTGTTTTTGTTGCTGGGTCCGTATGGAAAAGGTCCTCAGTATCATGAGATTGGGCGATCCATGGCCACGCTGATGACGGACGAGGTGagagattgattgattaaagatgcactaaaccccctgattttagctgactccaccctcagctcaaatttaaaaattggtTACAAAACAGAAGGAGTAGTTTAGTagtgtgatgtatgggtttaggagcGGAGcgggagcagcagcagtgtgcctctgacagcgattattgattgactaatttgcatatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU95964 lncRNA upstream 17704 4371144 ~ 4382681 (+) True G71129
TU95940 lncRNA upstream 54834 4345334 ~ 4345551 (+) True G71123
TU95932 lncRNA upstream 56735 4341703 ~ 4343650 (+) False G71117
TU95931 lncRNA upstream 57227 4340687 ~ 4343158 (+) True G71117
TU95933 lncRNA upstream 58796 4340687 ~ 4341589 (+) False G71117
TU95954 lncRNA downstream 21355 4436849 ~ 4441931 (+) False LOC103028288
TU95967 lncRNA downstream 30272 4445766 ~ 4461142 (+) True G71132
TU95985 lncRNA downstream 40436 4455930 ~ 4460401 (+) True G71147
TU96047 lncRNA downstream 95307 4510801 ~ 4511397 (+) True G71194
TU96054 lncRNA downstream 206324 4621818 ~ 4622240 (+) True G71201
XM_022671984.1 mRNA upstream 61303 4306665 ~ 4339082 (+) True dpy19l4
XM_022671985.1 mRNA upstream 61303 4309594 ~ 4339082 (+) False dpy19l4
XM_022671982.1 mRNA upstream 184669 4132022 ~ 4215716 (+) True LOC103045063
XM_022671983.1 mRNA upstream 184669 4165054 ~ 4215716 (+) False LOC103045063
XM_022671980.1 mRNA upstream 294422 3955008 ~ 4105963 (+) True LOC103042852
XM_015603237.2 mRNA downstream 442354 4857848 ~ 4884488 (+) True LOC103029142
XM_007239844.3 mRNA downstream 500327 4915821 ~ 4921819 (+) False atpif1
XM_007239845.3 mRNA downstream 513683 4929177 ~ 4935065 (+) True hnrnpr
XM_015603236.2 mRNA downstream 513687 4929181 ~ 4935065 (+) False hnrnpr
XM_007239846.3 mRNA downstream 513689 4929183 ~ 4935065 (+) False hnrnpr
TU95569 other upstream 825627 3412451 ~ 3574758 (+) False LOC111193071
TU95561 other upstream 1021775 3377684 ~ 3378610 (+) True G70846
TU95246 other upstream 2041156 2358883 ~ 2359229 (+) True G70604
TU95147 other upstream 3130981 1268767 ~ 1269404 (+) True G70522
TU94981 other upstream 3394547 1005483 ~ 1005838 (+) True G70385
LOC111193076 other downstream 540785 4956279 ~ 4957026 (+) True LOC111193076
TU96113 other downstream 540804 4956298 ~ 4980011 (+) True G71247
TU96114 other downstream 540804 4956298 ~ 4980011 (+) False G71247
TU96122 other downstream 548208 4963702 ~ 4967907 (+) True G71249
LOC111193046 other downstream 563973 4979467 ~ 4980022 (+) True LOC111193046

Expression Profile