RNA id: XM_022671986.1


Basic Information

Item Value
RNA id XM_022671986.1
length 4694
RNA type mRNA
GC content 0.52
exon number 27
gene id LOC103028288
representative False

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 4357065 ~ 4441931 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tctctctctctctgtctaacacacacacacacacacacacactcatacgaGACTAGCAGGGCATGGAGGCAGCTGCTGCCTCCACTAGTGCCGTTTTAACTGACATGGACGAGAGCCATGAAGAAGGAGAACACGTGCTGAGGAATCAGAGTGAAGAAGCCATTGTTGATCATGGCAAGACCGCTCAGGCCACACACACCAACTTTGAGAAAGAAGAACTGGAGAGTCACAGGGCTGTGTATGTGGGGGTCCATGTCCCTCTGGGGAAGGAGAGCAGACGCAGGCACAGACACCGAGGACACAGACACCACCGCAAGAGGAACAGGGAGAGAGACTCTGACCTGGAGGCCGGAGAGAGAGAATCACCCACATATGACACACCGTCTCAGCGAGtgcagtgcattctgggtactGAGGATGATGATGTGGAGCATGTTCCTCATGAGCTTTTCACTGAACTGGATGAACTGTCTGTCCGTCACGGGAACACTGAGTGGAGAGAGACAGCCAGatggCTGAAGTTCGAGGAGGACGTGGAGGATGGTGGAGAGAGGTGGAGTAAGCCTTATGTTGCCACTCTCTCTCTGCACAGCCTGTTTGAGCTGCGCAGCTGCATTCTGAATGGCACAGTGCTGCTGGACATGAGAGCTGACTCAATAGAGGATATCGCAGATATGGTGATAGACAGTATGGTTGCGTCCGGTCAGTTGGATGACTCTTTAAGGCAGAAGGTGCGGGAGGCGGTGCTAAAGCGTCATCACCACCAGAACGAGAGGAAGCTGAGCAACCGCTTCCCGCTGGCCGTGCGCTCACTGGCTGATATAGGCAAGAAACACTCCGACCCGCTCTTACTGGAGCGCAGTGGTGAAGGGTTGTCTGCGTCCCGCAATTCCCTTCTCAAACTGGGCGGCTCCATTTCAAACCTGTCCCAGAGACGCGAGTCCCGCGTCTCCATGCTCCTGAACCACCTCCTTCCTGGCCCCGCCCACGGCCACTCCCCCAGCCCCTCTCCCCAGAACACCCCGCCGTCCTCTCGGCGCTCTGGCTCCGCCCACAGACCCCCGGTGCACCTGGACATCCCCTCGGTGGTGGTGTCGCCTCCGGTGGAGGACGAGGAGACGGAGGGCATTTCTGCAGAGGAAGACGCGCTGGAGTTCACAGCTTGTGAAGgactgCTGGTGTCTGCTGGTTCTCTCTCTGGCTCTATGGACGCAGGCAGGCCTTCTGAAAACAGATCCAAACCAAACAGCAAAGATGGCAGCACTGTAGATCTCAGCAAGGTGGATATGAACTTTATGAGGAAGATTCCTCCAGGGGCGGAGGCATCAAATGTGCTGGTGGGTGAAGTGGACTTTCTGGATCGACCAATCATAGCCTTTGTTCGTCTCTCACCTGCTGTGCTGCTTACAGGACTCACAGAGGTGCCTGTCCCGaccaggttcTTGTTTTTGTTGCTGGGTCCGTATGGAAAAGGTCCTCAGTATCATGAGATTGGGCGATCCATGGCCACGCTGATGACGGACGAGATATTCCATGACGTAGCGTATAAGGCCAAGGACCGTGCAGATCTTCTCTCTGGCATTGACGAGTTTTTGGATCAGGTGACTGTTCTTCCACCTGGAGAGTGGGACCCCACCATCCGCATTGAGCCCCCCAAAAATGTCCCCTCACAGATGAAGAGGAAGGGGCTGTCACAGGCTAACGGCATGGCATCTTCTGCCGAGCCtcctgaagaagaagaacaccACGCTGGACCAGAGCTGCAGAGAACGGGCAGGGTTTTTGGAGGTCTGGTGAACGATGTGAAGCGTAAAGCTCCTTTTTACTGGAGTGATATAGTGGATGGCTTGAGCCTGCAGTGTGTGGCCTCTGTACTGTTCCTGTACTGCGCCTGCATGTCTCCAGTCATCACCTTCGGAGGACTGCTGGGAGAAGCCACCAGGAGCAACATAAGTGCTATAGAGTCGTTATTCGGAGCCTCTCTGACCGGTGTGGCGTTTTCGCTCTTTGCCGGACAGCCTCTGACCATCCTGGGCAGCACAGGGCCTGTTCTCGTCTTTGAGAAAATCCTCTTTAAATTCTGCGAGGATTATGGGATGACGTACCTGTCGCTGCGCTGCAGTATCGGCCTGTGGACGGCCTTCCTCTGCATAGTGCTGGTGGCCACAGACGCCAGCTCACTGGTGTGTTACATCACTCGCTTCACTGAGGAGGCCTTCGCTGCTCTAATCTGCATTATCTTCATCTACGAGGCTCTGGAGAAACTGCTGCACCTGGGCGAGCATTACCCGGTTAACACGCACAACACCCTGGATAACCTCACGCTGTACAGCTGTCAGTGTTCAGCTCCGGATCCAATAGCCAATGAGACGCTGCAGCTGTGGAACAACACGGGTCACAGTGTGGATTCAATACCATGGAATCAGCTCAACGTGTCGATGTGTAAGCTGCTCCACGGTGAGTTTGTTGGCTCCGCCTGTGGACACCACGGGCCCTTCATCCCAGATGTGCTCTTCTGGTCCATCATCCTGTTCTTCACcaccttcttcctctcctccttcctCAAGCAGTTCAAAACGGAGAGATACTTCCCCACCAGGgtgcgcTCCACTATCAGTGATTTTGCTGTGTTTCTGACTATATTGGTGATGGTGCTGGTGGATTTTCTGATGGGGATTCCATCGCCCAAACTTAACGTACCTGACCGCTTtgagCCCACTTCTAAGCACCGTGGCTGGTTCATCTCTCCACTGGAGAGTAACCCCTGGTGGACGATGCTTGTATCTGTTATTCCTGCTCTTCTCTGTACCATCCTCATCTTCATGGACCAGCAGATCACAGCAGTCATCATCAACCGCAAAGAGCACAAGCTTAAGAAAGGCTGTGGGTATCATCTGGATCTGCTGGTTGTGGCGGTGATGCTGGGTGTGTGTTCGATTATGGGGTTGCCGTGGTTCGTGGCAGCGACTGTGTTGTCCATCTCCCACGTGAACAGCCTGAAGCTGGAGTCCAGCTGTTCAGCTCCGGGGGAACAGCCCAAGTTCCTGGGTATCAGAGAACAGCGCCTCACTGGAGTCCTGATCTTCACTCTGATGGGCTGCTCCGTCTTTATGACTTCAGTGCTAAAGTTTATTCCCATGCCGGTGCTGTACGGGGTCTTTCTCTACATGGGTGTTTCTTCTCTGAAAGGCATACAGTTCTTTGACAGGATAAAACTGTTTGGCATGCCGGCGAAACACCAGCCGGATCTGATCTACCTGCGTTACGTGCCGCTGTGGAAGGTTCATATCTTTACGCTGGTGCAGCTCACATGCCTTGTGCTGCTGTGGGTCATCAAAGCTTCCTCCGCCCGCGTCGTCTTCCCTATGATGGTGCTGGCGCTGGTGTTCATCCGGAAGCTTCTGGATTTCTTCTTCACTAAGAGAGAGCTGAGCTGGCTGGATGACCTGATGCCTGAAagcaagaagaagaaagaagacgacaagaaaaagaagaaggccAAGCAGGAAGCGGAGGAGTgtctggaggaggaggaagaggtgaGACTGTCGtatgcaggaggaggaggaggagggaatATGCTAAAAATCCCACTGCAGTCTCACACCGGCAGTGTTGATCAGTCAGTTGTTAATATAACTGATGAAATGAACAAGAGTTCTGCATGGAAAGCTGTTGCATCAAACACCATGAAGAGGAGTGAGAGTCAGGAGAAGGTGGCCTGTGTTAGGGTGAACCTGGAAGGAGCCCAGAACGGTTGTGATAAGACTAATGTAGAGACCGCTCTCTAGAGGAGATTATTCTACTCTTTTGGTGCTGTGGAGACCCCAACAGTACAGTGAAACCCTCCTGCTGGAGCAGAGCAGCCTGCACTGGGGCCTCGGCCTGGGCTGGACTCAGCAGGGCCCCCCGCTGACCCGGAGGTGAGAGGAGCACGGTGTGGAAGAACAAGGTACCAACGACAAACCCAACAGGCCACATTAAAGACCAGCAGCCCAACTGACTCCTTTTATCTCTCTGTTtagcttttattaaacttttattttatttctggtttcttttatttgctgttacagcattttactgtatttttttatttttatttagaatgttcattattaatgataataataaaacatcattAATAGATCATACAGTTGGCTGGGAGCGGTCCTGAAGCCACTGCACTGTACTGATTGCTTAAAAATGATTGTGCTTTAACACAAATTCATAAACGTGTCTTCAGAATGATGCCATGTTTCACGTTCATACATGCTGTCGTGTTGGACGCCCTTTAAAACGTACAAGTTCTACTTCAGGTTTAATTAAGCGTGCCTTGTAAAAACGGCTGTTTTCACGTACAGCCACAGAAATGGAGGAGGACGCttgggtataaaaaaaaaaaaaaaaagagagagagagagagactgttgCCCAGAAGAGATGATCTTTTCCCAAACCCATATTTAGTTCAGTTCCAAAGACTGTGATGTGTCTATAGTGTCCCATCCTTTCACACCTCCACAGAACAGACTCCACAGAGTCTCTGATTCTTCATCAGTTCTGATACTGATCTCTGTATTTGAAGCACACTTTCTGAGGATTTGGGATTTCAGTGTTGAGTCTGTATTCCCGCTCTGGTGTGTGGAAGTGTTTCACACGTCGCCGAGTCATTTTTAAACGTCTTTCTTGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU95940 lncRNA upstream 11514 4345334 ~ 4345551 (+) True G71123
TU95932 lncRNA upstream 13415 4341703 ~ 4343650 (+) False G71117
TU95931 lncRNA upstream 13907 4340687 ~ 4343158 (+) True G71117
TU95933 lncRNA upstream 15476 4340687 ~ 4341589 (+) False G71117
TU95934 lncRNA upstream 16737 4339465 ~ 4340328 (+) True G71118
TU95967 lncRNA downstream 7010 4445766 ~ 4461142 (+) True G71132
TU95985 lncRNA downstream 17174 4455930 ~ 4460401 (+) True G71147
TU96047 lncRNA downstream 72045 4510801 ~ 4511397 (+) True G71194
TU96054 lncRNA downstream 183062 4621818 ~ 4622240 (+) True G71201
TU96062 lncRNA downstream 239575 4678331 ~ 4678722 (+) True G71209
XM_022671984.1 mRNA upstream 17983 4306665 ~ 4339082 (+) True dpy19l4
XM_022671985.1 mRNA upstream 17983 4309594 ~ 4339082 (+) False dpy19l4
XM_022671982.1 mRNA upstream 141349 4132022 ~ 4215716 (+) True LOC103045063
XM_022671983.1 mRNA upstream 141349 4165054 ~ 4215716 (+) False LOC103045063
XM_022671980.1 mRNA upstream 251102 3955008 ~ 4105963 (+) True LOC103042852
XM_015603237.2 mRNA downstream 419092 4857848 ~ 4884488 (+) True LOC103029142
XM_007239844.3 mRNA downstream 477065 4915821 ~ 4921819 (+) False atpif1
XM_007239845.3 mRNA downstream 490421 4929177 ~ 4935065 (+) True hnrnpr
XM_015603236.2 mRNA downstream 490425 4929181 ~ 4935065 (+) False hnrnpr
XM_007239846.3 mRNA downstream 490427 4929183 ~ 4935065 (+) False hnrnpr
TU95569 other upstream 782307 3412451 ~ 3574758 (+) False LOC111193071
TU95561 other upstream 978455 3377684 ~ 3378610 (+) True G70846
TU95246 other upstream 1997836 2358883 ~ 2359229 (+) True G70604
TU95147 other upstream 3087661 1268767 ~ 1269404 (+) True G70522
TU94981 other upstream 3351227 1005483 ~ 1005838 (+) True G70385
LOC111193076 other downstream 517523 4956279 ~ 4957026 (+) True LOC111193076
TU96113 other downstream 517542 4956298 ~ 4980011 (+) True G71247
TU96114 other downstream 517542 4956298 ~ 4980011 (+) False G71247
TU96122 other downstream 524946 4963702 ~ 4967907 (+) True G71249
LOC111193046 other downstream 540711 4979467 ~ 4980022 (+) True LOC111193046

Expression Profile