RNA id: TU96047


Basic Information

Item Value
RNA id TU96047
length 597
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G71194
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 4510801 ~ 4511397 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tttagcttttggtaattaatgtttttccctttagataaggctgcagattcaggggttcatggacagaggaaattgtggtaaactgagatgctggtgctgttgttctcccactgcacacggtcactcaggtttgtggacggtggagtgggtggatgccagtgtttcagggagcctccatgtctatgttaccttctggctctagttaggctgttttattcagttctgccggagtcatttgccacactctgataatgttttaatattctcagttttgcataaatccagtcaaaactaattccatctctctgctttcctccgagttactgactgcccacctgtctgacccgataccgatgttggaccctcaggctctcgcgtctcctgtccggccagactgatggaagtttctgaagtcagctcttctccaccaccaccacagatcagctgctcatcgaccatcttattctccactactgattacatccaagccattagtggcgctattacactcctgaatatataaaacctatgtggatgtataaagactttttaaattttaatttaaaagccgtttgaccagtggtaggatggtccccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU95967 lncRNA upstream 49659 4445766 ~ 4461142 (+) True G71132
TU95985 lncRNA upstream 50400 4455930 ~ 4460401 (+) True G71147
TU95954 lncRNA upstream 68870 4436849 ~ 4441931 (+) False LOC103028288
TU95951 lncRNA upstream 95307 4400385 ~ 4415494 (+) True LOC103028288
TU95964 lncRNA upstream 128120 4371144 ~ 4382681 (+) True G71129
TU96054 lncRNA downstream 110421 4621818 ~ 4622240 (+) True G71201
TU96062 lncRNA downstream 166934 4678331 ~ 4678722 (+) True G71209
TU96070 lncRNA downstream 232756 4744153 ~ 4844213 (+) True G71215
TU96100 lncRNA downstream 404416 4915813 ~ 4921820 (+) True atpif1
TU96107 lncRNA downstream 430012 4941409 ~ 4942117 (+) True G71244
XM_022671986.1 mRNA upstream 72045 4357065 ~ 4438756 (+) False LOC103028288
XM_022671984.1 mRNA upstream 171719 4306665 ~ 4339082 (+) True dpy19l4
XM_022671985.1 mRNA upstream 171719 4309594 ~ 4339082 (+) False dpy19l4
XM_022671982.1 mRNA upstream 295085 4132022 ~ 4215716 (+) True LOC103045063
XM_015603237.2 mRNA downstream 346451 4857848 ~ 4884488 (+) True LOC103029142
XM_007239844.3 mRNA downstream 404424 4915821 ~ 4921819 (+) False atpif1
XM_007239845.3 mRNA downstream 417780 4929177 ~ 4935065 (+) True hnrnpr
XM_015603236.2 mRNA downstream 417784 4929181 ~ 4935065 (+) False hnrnpr
XM_007239846.3 mRNA downstream 417786 4929183 ~ 4935065 (+) False hnrnpr
TU95569 other upstream 936043 3412451 ~ 3574758 (+) False LOC111193071
TU95561 other upstream 1132191 3377684 ~ 3378610 (+) True G70846
TU95246 other upstream 2151572 2358883 ~ 2359229 (+) True G70604
TU95147 other upstream 3241397 1268767 ~ 1269404 (+) True G70522
TU94981 other upstream 3504963 1005483 ~ 1005838 (+) True G70385
LOC111193076 other downstream 444882 4956279 ~ 4957026 (+) True LOC111193076
TU96113 other downstream 444901 4956298 ~ 4980011 (+) True G71247
TU96114 other downstream 444901 4956298 ~ 4980011 (+) False G71247
TU96122 other downstream 452305 4963702 ~ 4967907 (+) True G71249
LOC111193046 other downstream 468070 4979467 ~ 4980022 (+) True LOC111193046

Expression Profile