RNA id: TU96070


Basic Information

Item Value
RNA id TU96070
length 219
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G71215
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 4744153 ~ 4844213 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ccatgaatccttacattgtcatcttggaatatgttcgtgttcatcagggaagaaaaaatccattgatggaataacctggtctatattcagtatattcaggtagtcagctgacctcattctttcagcacatactgttgctgaacctaaacctgcagaccaactgcagcatcaaccccacatcatttacttacttacatccaggtggagactttctttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96062 lncRNA upstream 65431 4678331 ~ 4678722 (+) True G71209
TU96054 lncRNA upstream 121913 4621818 ~ 4622240 (+) True G71201
TU96047 lncRNA upstream 232756 4510801 ~ 4511397 (+) True G71194
TU95967 lncRNA upstream 283011 4445766 ~ 4461142 (+) True G71132
TU95985 lncRNA upstream 283752 4455930 ~ 4460401 (+) True G71147
TU96100 lncRNA downstream 71600 4915813 ~ 4921820 (+) True atpif1
TU96107 lncRNA downstream 97196 4941409 ~ 4942117 (+) True G71244
TU96119 lncRNA downstream 113943 4958156 ~ 5006225 (+) True G71248
TU96110 lncRNA downstream 119758 4963971 ~ 4968919 (+) True G71246
TU96132 lncRNA downstream 146639 4990852 ~ 4993179 (+) True G71256
XM_022671986.1 mRNA upstream 305397 4357065 ~ 4438756 (+) False LOC103028288
XM_022671984.1 mRNA upstream 405071 4306665 ~ 4339082 (+) True dpy19l4
XM_022671985.1 mRNA upstream 405071 4309594 ~ 4339082 (+) False dpy19l4
XM_022671982.1 mRNA upstream 528437 4132022 ~ 4215716 (+) True LOC103045063
XM_015603237.2 mRNA downstream 13635 4857848 ~ 4884488 (+) True LOC103029142
XM_007239844.3 mRNA downstream 71608 4915821 ~ 4921819 (+) False atpif1
XM_007239845.3 mRNA downstream 84964 4929177 ~ 4935065 (+) True hnrnpr
XM_015603236.2 mRNA downstream 84968 4929181 ~ 4935065 (+) False hnrnpr
XM_007239846.3 mRNA downstream 84970 4929183 ~ 4935065 (+) False hnrnpr
TU95569 other upstream 1169395 3412451 ~ 3574758 (+) False LOC111193071
TU95561 other upstream 1365543 3377684 ~ 3378610 (+) True G70846
TU95246 other upstream 2384924 2358883 ~ 2359229 (+) True G70604
TU95147 other upstream 3474749 1268767 ~ 1269404 (+) True G70522
TU94981 other upstream 3738315 1005483 ~ 1005838 (+) True G70385
LOC111193076 other downstream 112066 4956279 ~ 4957026 (+) True LOC111193076
TU96113 other downstream 112085 4956298 ~ 4980011 (+) True G71247
TU96114 other downstream 112085 4956298 ~ 4980011 (+) False G71247
TU96122 other downstream 119489 4963702 ~ 4967907 (+) True G71249
LOC111193046 other downstream 135254 4979467 ~ 4980022 (+) True LOC111193046

Expression Profile