Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU96100 |
| length | 567 |
| lncRNA type | sense_over |
| GC content | 0.49 |
| exon number | 3 |
| gene id | atpif1 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_035904.1 |
| NCBI id | CM008307.1 |
| chromosome length | 27092187 |
| location | 4915813 ~ 4921820 (+) |
| genome version | Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome |
| species | mexican tetra (Astyanax mexicanus) |
| id | name | namespace |
|---|---|---|
| GO:1902600 | proton transmembrane transport | biological_process |
| GO:0044455 | obsolete mitochondrial membrane part | cellular_component |
| GO:0070469 | respirasome | cellular_component |
| GO:0008137 | NADH dehydrogenase (ubiquinone) activity | molecular_function |
| GO:0003954 | NADH dehydrogenase activity | molecular_function |
| GO:0016491 | oxidoreductase activity | molecular_function |
| GO:0050136 | NADH dehydrogenase (quinone) activity | molecular_function |
| GO:0015002 | heme-copper terminal oxidase activity | molecular_function |
| GO:0015077 | monovalent inorganic cation transmembrane transporter activity | molecular_function |
| GO:0015078 | proton transmembrane transporter activity | molecular_function |
| GO:0016651 | oxidoreductase activity, acting on NAD(P)H | molecular_function |
| GO:0016655 | oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | molecular_function |
| GO:0004129 | cytochrome-c oxidase activity | molecular_function |
| GO:0016675 | oxidoreductase activity, acting on a heme group of donors | molecular_function |
| GO:0016676 | oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor | molecular_function |
| id | description |
|---|---|
| ko00640 | Propanoate metabolism |
| ko00190 | Oxidative phosphorylation |
| ko00071 | Fatty acid degradation |
| ko00280 | Valine, leucine and isoleucine degradation |
| ko04723 | Retrograde endocannabinoid signaling |
| ko04714 | Thermogenesis |
| ko05010 | Alzheimer disease |
| ko05012 | Parkinson disease |
| ko05016 | Huntington disease |
| ko04932 | Non-alcoholic fatty liver disease |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU96070 | lncRNA | upstream | 71600 | 4744153 ~ 4844213 (+) | True | G71215 |
| TU96062 | lncRNA | upstream | 237091 | 4678331 ~ 4678722 (+) | True | G71209 |
| TU96054 | lncRNA | upstream | 293573 | 4621818 ~ 4622240 (+) | True | G71201 |
| TU96047 | lncRNA | upstream | 404416 | 4510801 ~ 4511397 (+) | True | G71194 |
| TU95967 | lncRNA | upstream | 454671 | 4445766 ~ 4461142 (+) | True | G71132 |
| TU96107 | lncRNA | downstream | 19589 | 4941409 ~ 4942117 (+) | True | G71244 |
| TU96119 | lncRNA | downstream | 36336 | 4958156 ~ 5006225 (+) | True | G71248 |
| TU96110 | lncRNA | downstream | 42151 | 4963971 ~ 4968919 (+) | True | G71246 |
| TU96132 | lncRNA | downstream | 69032 | 4990852 ~ 4993179 (+) | True | G71256 |
| TU96138 | lncRNA | downstream | 79271 | 5001091 ~ 5043758 (+) | True | G71260 |
| XM_015603237.2 | mRNA | upstream | 31325 | 4857848 ~ 4884488 (+) | True | LOC103029142 |
| XM_022671986.1 | mRNA | upstream | 477057 | 4357065 ~ 4438756 (+) | False | LOC103028288 |
| XM_022671984.1 | mRNA | upstream | 576731 | 4306665 ~ 4339082 (+) | True | dpy19l4 |
| XM_022671985.1 | mRNA | upstream | 576731 | 4309594 ~ 4339082 (+) | False | dpy19l4 |
| XM_022671982.1 | mRNA | upstream | 700097 | 4132022 ~ 4215716 (+) | True | LOC103045063 |
| XM_007239845.3 | mRNA | downstream | 7357 | 4929177 ~ 4935065 (+) | True | hnrnpr |
| XM_015603236.2 | mRNA | downstream | 7361 | 4929181 ~ 4935065 (+) | False | hnrnpr |
| XM_007239846.3 | mRNA | downstream | 7363 | 4929183 ~ 4935065 (+) | False | hnrnpr |
| XM_007239848.3 | mRNA | downstream | 21386 | 4943206 ~ 4954889 (+) | True | dnajc8 |
| XM_022671992.1 | mRNA | downstream | 126686 | 5048506 ~ 5067507 (+) | True | cfap69 |
| TU95569 | other | upstream | 1341055 | 3412451 ~ 3574758 (+) | False | LOC111193071 |
| TU95561 | other | upstream | 1537203 | 3377684 ~ 3378610 (+) | True | G70846 |
| TU95246 | other | upstream | 2556584 | 2358883 ~ 2359229 (+) | True | G70604 |
| TU95147 | other | upstream | 3646409 | 1268767 ~ 1269404 (+) | True | G70522 |
| TU94981 | other | upstream | 3909975 | 1005483 ~ 1005838 (+) | True | G70385 |
| LOC111193076 | other | downstream | 34459 | 4956279 ~ 4957026 (+) | True | LOC111193076 |
| TU96113 | other | downstream | 34478 | 4956298 ~ 4980011 (+) | True | G71247 |
| TU96114 | other | downstream | 34478 | 4956298 ~ 4980011 (+) | False | G71247 |
| TU96122 | other | downstream | 41882 | 4963702 ~ 4967907 (+) | True | G71249 |
| LOC111193046 | other | downstream | 57647 | 4979467 ~ 4980022 (+) | True | LOC111193046 |
