RNA id: TU96114


Basic Information

Item Value
RNA id TU96114
length 464
RNA type TUCP
GC content 0.47
exon number 3
gene id G71247
representative False

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 4956298 ~ 4980011 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGCTTCAGTGCTCTGGGAGTGTTTATAGTCCTGTGAGTTTAACACTTCATGACTGAGAGCTGCTACAGCAACTTCTTCACCCACAGCAGCCATGACTTTAATCCCCATCTTCATCTGGACCCTGATCTTCTGCTCTCAAGAGTCCATAGGTCAGGTGACTGTGACTCAGAGTCCTGCAGTGAAATCTGCTCTTCCAGGAGACACCGTCACCATCAGCTGCAGGACCAGTCCTGCTGTTTACAGTGACTCAAATGGTCACTTCTTACACTGGTATCAGCAAAAACCAGGAGAAGTTCCTaaactgattattaaaaaaGTCACAGAGTTAGAATCTGGTTTTGCAGCTCGTTTCAGTGGTAGTGGATCTGGATCTGACTTCACTCTGACCATCAGTGGAGTCCAGCCTGAAGATGCTGCAGATTATTACTGCCAGAGTCGTCATCATATCAGCAGCACCAACCTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96107 lncRNA upstream 14181 4941409 ~ 4942117 (+) True G71244
TU96100 lncRNA upstream 34478 4915813 ~ 4921820 (+) True atpif1
TU96070 lncRNA upstream 112085 4744153 ~ 4844213 (+) True G71215
TU96062 lncRNA upstream 277576 4678331 ~ 4678722 (+) True G71209
TU96054 lncRNA upstream 334058 4621818 ~ 4622240 (+) True G71201
TU96132 lncRNA downstream 10841 4990852 ~ 4993179 (+) True G71256
TU96138 lncRNA downstream 21080 5001091 ~ 5043758 (+) True G71260
TU96175 lncRNA downstream 153724 5133735 ~ 5137567 (+) True G71287
TU96186 lncRNA downstream 225205 5205216 ~ 5207077 (+) True G71294
TU96198 lncRNA downstream 315667 5295678 ~ 5298321 (+) True G71304
XM_007239848.3 mRNA upstream 1409 4943206 ~ 4954889 (+) True dnajc8
XM_007239845.3 mRNA upstream 21233 4929177 ~ 4935065 (+) True hnrnpr
XM_015603236.2 mRNA upstream 21233 4929181 ~ 4935065 (+) False hnrnpr
XM_007239846.3 mRNA upstream 21233 4929183 ~ 4935065 (+) False hnrnpr
XM_007239844.3 mRNA upstream 34479 4915821 ~ 4921819 (+) False atpif1
XM_022671992.1 mRNA downstream 68495 5048506 ~ 5067507 (+) True cfap69
XM_022671993.1 mRNA downstream 88890 5068901 ~ 5082606 (+) True LOC103041177
XM_007253633.2 mRNA downstream 111867 5091878 ~ 5117839 (+) True LOC103040455
XM_007253634.2 mRNA downstream 111870 5091881 ~ 5112015 (+) False LOC103040455
XM_007253631.3 mRNA downstream 143943 5123954 ~ 5130557 (+) True ccng1
TU95569 other upstream 1381540 3412451 ~ 3574758 (+) False LOC111193071
TU95561 other upstream 1577688 3377684 ~ 3378610 (+) True G70846
TU95246 other upstream 2597069 2358883 ~ 2359229 (+) True G70604
TU95147 other upstream 3686894 1268767 ~ 1269404 (+) True G70522
TU94981 other upstream 3950460 1005483 ~ 1005838 (+) True G70385
TU96351 other downstream 519897 5499908 ~ 5505638 (+) True G71414
trnaa-agc_14 other downstream 1056791 6036802 ~ 6036874 (+) True trnaa-agc_14
trnaa-agc_15 other downstream 1057665 6037676 ~ 6037748 (+) True trnaa-agc_15
TU96736 other downstream 1545630 6525641 ~ 6538794 (+) True G71682
TU96877 other downstream 1901576 6881587 ~ 6885541 (+) True G71788

Expression Profile