RNA id: TU96119


Basic Information

Item Value
RNA id TU96119
length 633
lncRNA type inter_gene
GC content 0.36
exon number 3
gene id G71248
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 4958156 ~ 5006225 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aggaaaacacattaaagAAGCAGGAAGCATATATccatcaaaaatacaaaacactgattactttaaacatgtttaaactaCAATTTTCCTCAGTTTTACACTCATCTCATCATTTTCtagactttttttaaatcatatgttACTCATGTCTTTCCTCGTTAGAAACCCTGAGTAAGGCTCAGTCTCTGCATTTCATTTAGTGCAGTGTTTTActacaaacacattaaaatcaaAACATCAGcatgtgcaacataaaaaaaacacaaaaaaaatcagctgatataaatgtttaaacaatataaaatgatGAACAATGATCTACGTCAGtacataatacattaataaaaatctatttcttttttctaaCAGGCTTCATGATTGCagtaaaatgcaaatattaacaAATCCACTTCTCAGTTATGCTCTCACACTCAGACCTGCTGCCACTCTGCCTCTCACAGGCTTACTGTGCTGTTTCACTCTGTGAGTCAGTGGCTCTTCGTCCGAGCTGTCTGCCTCACTTTTCACATCTGTGGTTGCTCTGCCTCTCACAGGTTTACTGTGCTGTTTCAGTCTCTTCACTTTGTGACTCAGCGGCTCCTCATCTGAACTTTCTGCTTTACTCTTCTCATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96107 lncRNA upstream 16039 4941409 ~ 4942117 (+) True G71244
TU96100 lncRNA upstream 36336 4915813 ~ 4921820 (+) True atpif1
TU96070 lncRNA upstream 113943 4744153 ~ 4844213 (+) True G71215
TU96062 lncRNA upstream 279434 4678331 ~ 4678722 (+) True G71209
TU96054 lncRNA upstream 335916 4621818 ~ 4622240 (+) True G71201
TU96175 lncRNA downstream 127510 5133735 ~ 5137567 (+) True G71287
TU96186 lncRNA downstream 198991 5205216 ~ 5207077 (+) True G71294
TU96198 lncRNA downstream 289453 5295678 ~ 5298321 (+) True G71304
TU96333 lncRNA downstream 317444 5323669 ~ 5324887 (+) True G71397
TU96347 lncRNA downstream 402806 5409031 ~ 5410313 (+) True G71411
XM_007239848.3 mRNA upstream 3267 4943206 ~ 4954889 (+) True dnajc8
XM_007239845.3 mRNA upstream 23091 4929177 ~ 4935065 (+) True hnrnpr
XM_015603236.2 mRNA upstream 23091 4929181 ~ 4935065 (+) False hnrnpr
XM_007239846.3 mRNA upstream 23091 4929183 ~ 4935065 (+) False hnrnpr
XM_007239844.3 mRNA upstream 36337 4915821 ~ 4921819 (+) False atpif1
XM_022671992.1 mRNA downstream 42281 5048506 ~ 5067507 (+) True cfap69
XM_022671993.1 mRNA downstream 62676 5068901 ~ 5082606 (+) True LOC103041177
XM_007253633.2 mRNA downstream 85653 5091878 ~ 5117839 (+) True LOC103040455
XM_007253634.2 mRNA downstream 85656 5091881 ~ 5112015 (+) False LOC103040455
XM_007253631.3 mRNA downstream 117729 5123954 ~ 5130557 (+) True ccng1
LOC111193076 other upstream 1130 4956279 ~ 4957026 (+) True LOC111193076
TU95569 other upstream 1383398 3412451 ~ 3574758 (+) False LOC111193071
TU95561 other upstream 1579546 3377684 ~ 3378610 (+) True G70846
TU95246 other upstream 2598927 2358883 ~ 2359229 (+) True G70604
TU95147 other upstream 3688752 1268767 ~ 1269404 (+) True G70522
TU96351 other downstream 493683 5499908 ~ 5505638 (+) True G71414
trnaa-agc_14 other downstream 1030577 6036802 ~ 6036874 (+) True trnaa-agc_14
trnaa-agc_15 other downstream 1031451 6037676 ~ 6037748 (+) True trnaa-agc_15
TU96736 other downstream 1519416 6525641 ~ 6538794 (+) True G71682
TU96877 other downstream 1875362 6881587 ~ 6885541 (+) True G71788

Expression Profile