RNA id: TU96132


Basic Information

Item Value
RNA id TU96132
length 363
lncRNA type inter_gene
GC content 0.53
exon number 2
gene id G71256
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 4990852 ~ 4993179 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cacaccttagcaaccaccccggataccatagcaacaccttagcaaccacctagcaaccacctagcaacacctagcaacaccttagcaaccaccccggataccatagcaacaccttagcaaccacctagcaacaccctagcaaccacctagcaacaccttagcaaccaccccggataccatagcaacaccttagcaaccgcctagcaacaccttagcaaccgcctagcaacaccttagcaaccacctagcaacaccttagcaaccaccccggataccatagcaacaccttagcaaccgcctagcaacaccttagcaacaccttagcaacaccttagcaaccgcctagcaacaccttagcaaccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96110 lncRNA upstream 21933 4963971 ~ 4968919 (+) True G71246
TU96107 lncRNA upstream 48735 4941409 ~ 4942117 (+) True G71244
TU96100 lncRNA upstream 69032 4915813 ~ 4921820 (+) True atpif1
TU96070 lncRNA upstream 146639 4744153 ~ 4844213 (+) True G71215
TU96062 lncRNA upstream 312130 4678331 ~ 4678722 (+) True G71209
TU96138 lncRNA downstream 7912 5001091 ~ 5043758 (+) True G71260
TU96175 lncRNA downstream 140556 5133735 ~ 5137567 (+) True G71287
TU96186 lncRNA downstream 212037 5205216 ~ 5207077 (+) True G71294
TU96198 lncRNA downstream 302499 5295678 ~ 5298321 (+) True G71304
TU96333 lncRNA downstream 330490 5323669 ~ 5324887 (+) True G71397
XM_007239848.3 mRNA upstream 35963 4943206 ~ 4954889 (+) True dnajc8
XM_007239845.3 mRNA upstream 55787 4929177 ~ 4935065 (+) True hnrnpr
XM_015603236.2 mRNA upstream 55787 4929181 ~ 4935065 (+) False hnrnpr
XM_007239846.3 mRNA upstream 55787 4929183 ~ 4935065 (+) False hnrnpr
XM_007239844.3 mRNA upstream 69033 4915821 ~ 4921819 (+) False atpif1
XM_022671992.1 mRNA downstream 55327 5048506 ~ 5067507 (+) True cfap69
XM_022671993.1 mRNA downstream 75722 5068901 ~ 5082606 (+) True LOC103041177
XM_007253633.2 mRNA downstream 98699 5091878 ~ 5117839 (+) True LOC103040455
XM_007253634.2 mRNA downstream 98702 5091881 ~ 5112015 (+) False LOC103040455
XM_007253631.3 mRNA downstream 130775 5123954 ~ 5130557 (+) True ccng1
LOC111193046 other upstream 10830 4979467 ~ 4980022 (+) True LOC111193046
TU96113 other upstream 10841 4956298 ~ 4980011 (+) True G71247
TU96114 other upstream 10841 4956298 ~ 4980011 (+) False G71247
TU96122 other upstream 22945 4963702 ~ 4967907 (+) True G71249
LOC111193076 other upstream 33826 4956279 ~ 4957026 (+) True LOC111193076
TU96351 other downstream 506729 5499908 ~ 5505638 (+) True G71414
trnaa-agc_14 other downstream 1043623 6036802 ~ 6036874 (+) True trnaa-agc_14
trnaa-agc_15 other downstream 1044497 6037676 ~ 6037748 (+) True trnaa-agc_15
TU96736 other downstream 1532462 6525641 ~ 6538794 (+) True G71682
TU96877 other downstream 1888408 6881587 ~ 6885541 (+) True G71788

Expression Profile