RNA id: TU96175


Basic Information

Item Value
RNA id TU96175
length 580
lncRNA type inter_gene
GC content 0.49
exon number 3
gene id G71287
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 5133735 ~ 5137567 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTGAGTTTTCTCTGCATCTGGTCCTGCACCCATGGATCTGCAGCGTACTGGCCCTCTAGCAGCGAAGCCCAGCAGTTTCCAGCCTCCCGGTTCGTCTTCATCAGAACTATCCTGATCAGCTTTTTGTCTTCTAATGTCCACGTCGCCTCGTCTCCCACTGTTGTTCCAAACAGCTTTCCCTTAAATATCTCCTGTCCTCTCACACTCAGCTCCACCTCTCTGCTCCCCAGTTTACACCTGATTTCTTTACTGGATGTTCCAGGAGGGACATTTATCTCGATGAAGATCTCCTCCATGGTCTGATACCAGGAGCCCCAGGGGGTTTTACAGGGGATGACCCCGCTCCTCTCCTCGAAATGCACCGACATGCTGTGTTATTACTGTAGTTAGCTGGGCTAGTGTTATAGTTACTGCAGCCTGGCCGGGCTAACAGACTGAACCCTGTGCTGTAGTGTAACCAGCTCTGATCTGATCTAATAAAAAAGCAGAGGAGACCTACAGCTGAAGAATAACAGCAGAGGAACGCTgatactgaactgaactgatctcTCAATCTTCTCCTACATTCCTGCAGTTTCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96138 lncRNA upstream 89977 5001091 ~ 5043758 (+) True G71260
TU96119 lncRNA upstream 127510 4958156 ~ 5006225 (+) True G71248
TU96132 lncRNA upstream 140556 4990852 ~ 4993179 (+) True G71256
TU96110 lncRNA upstream 164816 4963971 ~ 4968919 (+) True G71246
TU96107 lncRNA upstream 191618 4941409 ~ 4942117 (+) True G71244
TU96186 lncRNA downstream 67649 5205216 ~ 5207077 (+) True G71294
TU96198 lncRNA downstream 158111 5295678 ~ 5298321 (+) True G71304
TU96333 lncRNA downstream 186102 5323669 ~ 5324887 (+) True G71397
TU96347 lncRNA downstream 271464 5409031 ~ 5410313 (+) True G71411
TU96348 lncRNA downstream 271464 5409031 ~ 5410023 (+) False G71411
XM_007253631.3 mRNA upstream 3178 5123954 ~ 5130557 (+) True ccng1
XM_007253633.2 mRNA upstream 15896 5091878 ~ 5117839 (+) True LOC103040455
XM_007253634.2 mRNA upstream 21720 5091881 ~ 5112015 (+) False LOC103040455
XM_022671993.1 mRNA upstream 51129 5068901 ~ 5082606 (+) True LOC103041177
XM_022671992.1 mRNA upstream 66228 5048506 ~ 5067507 (+) True cfap69
XM_007253630.3 mRNA downstream 6198 5143765 ~ 5173256 (+) True gabra6
XM_022671996.1 mRNA downstream 44936 5182503 ~ 5311990 (+) False gabrb2
XM_022671995.1 mRNA downstream 45032 5182599 ~ 5313658 (+) True gabrb2
XM_022671997.1 mRNA downstream 202083 5339650 ~ 5408015 (+) True atp10b
XM_022671999.1 mRNA downstream 293122 5430689 ~ 5476431 (+) True atp7a
LOC111193046 other upstream 153713 4979467 ~ 4980022 (+) True LOC111193046
TU96113 other upstream 153724 4956298 ~ 4980011 (+) True G71247
TU96114 other upstream 153724 4956298 ~ 4980011 (+) False G71247
TU96122 other upstream 165828 4963702 ~ 4967907 (+) True G71249
LOC111193076 other upstream 176709 4956279 ~ 4957026 (+) True LOC111193076
TU96351 other downstream 362341 5499908 ~ 5505638 (+) True G71414
trnaa-agc_14 other downstream 899235 6036802 ~ 6036874 (+) True trnaa-agc_14
trnaa-agc_15 other downstream 900109 6037676 ~ 6037748 (+) True trnaa-agc_15
TU96736 other downstream 1388074 6525641 ~ 6538794 (+) True G71682
TU96877 other downstream 1744020 6881587 ~ 6885541 (+) True G71788

Expression Profile