RNA id: TU96186


Basic Information

Item Value
RNA id TU96186
length 1422
lncRNA type intronic
GC content 0.34
exon number 3
gene id G71294
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 5205216 ~ 5207077 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tagtcagaATACATCCAGTTGCAGAACAATAATGGGTGGTGAACTGTAAGTGAGATGGTAAATGTAGAGACTGTTTTAGAGAATAGTCTctagaaaaacattttagaacacTTGATTTTTGAGAATGTTCTCTAGAACTGTGTAAATAGGTAGGGTATATTCTACAGCTTTGTGAATGGGTAGAGAACACTCTAGATCACTGTAAATGGATAGCGTGTTCTGGAACACTGAATTGTATAACCATTCTTTAAATAACGTTATCTAGAATGATTTGAATGGTCTGAGGGTATTCTAGAACTGTGTTAAGAAGTAGAGTGCTTTCTAGAACACTGTAAATGTATTGGAAAGTTTGAGAACCTTCTCTAGAGGAACATTTTAGAGCACTGGATTTGGGAGAACATAGAGTAGAACTGTATAAATATGTTGGGTATATTCTATAGCTCTATTAATGGGTAGAGAACATCCTAGAACACcatgaatgaatatattattctaGAACACTGAATTGTAAAGACATTCTTTTAAGAAACACCATCTAGAATTATTTGAAGGTTCTGAGGGTATTATAGGAAGAGGTAGAGTACATTCTAGAACACTGTAAATGCATTGGAATGTTCTTGGACACTGTCCATTGTTAGAACATTATCTAAAGCCATTTTCAAGAACCTTGGGATTCTGAGAAAATGTTCTAGAACTGTGTGAATAGgtagagaacattctagaacactgTAAATGGATAGAATGTTCTGGAACACTGAATTgtaaaaacattctttaaagaAACATTATCTAAAATTATTAGAATGGTCTGAGGGTATTATAGAACTGCGTGAAGAGGTAGAGTACATTCTAGAACACTGTAAATGCATGGGGAATGTTTGAGGACACTGTCTGTTGTTTGAATATTGTCTAGAGGAACTTTCAAGAACCTTGGGgttctaaaaacattttctagAACTGTGTGAATGGGTAGAGAACATTCCAGAACTGTGTGATGATAAACATTCTGTGAGTGAGATTGTGATTTTAGAGACTGTTTTTAGAGAATATtctctaaaaaacattttagaacacTGGATTTGTGAGAACATTTTGTAGAACTGTGTAAATAGATAGAGTTTATTCTAGAACACTTTAAATGGCaaaagaacattctagaacaattAAAATGGATAAAGTGTTCTAGAACACTGAATTGTAAAAGCATTCTTTAAAGAAACATTATCTAGCATTATTTGAATGGTCTCAGGGTATTCTAGAATGGCGTGAAGGGGTAGAGTACATTCTAGAACACTGTAAATGCATGGGAATGTTTGAGGACACTGTCCATTGTTAGAACGTTATCTAGATGAACTTTCAAGAACCTTGGGATTCTGAGAACATTTTCTAGAACTATGTGAATGGGTAGAGGATATTCTAGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96175 lncRNA upstream 67649 5133735 ~ 5137567 (+) True G71287
TU96138 lncRNA upstream 161458 5001091 ~ 5043758 (+) True G71260
TU96119 lncRNA upstream 198991 4958156 ~ 5006225 (+) True G71248
TU96132 lncRNA upstream 212037 4990852 ~ 4993179 (+) True G71256
TU96110 lncRNA upstream 236297 4963971 ~ 4968919 (+) True G71246
TU96198 lncRNA downstream 88601 5295678 ~ 5298321 (+) True G71304
TU96333 lncRNA downstream 116592 5323669 ~ 5324887 (+) True G71397
TU96347 lncRNA downstream 201954 5409031 ~ 5410313 (+) True G71411
TU96348 lncRNA downstream 201954 5409031 ~ 5410023 (+) False G71411
TU96416 lncRNA downstream 320919 5527996 ~ 5532969 (+) True G71473
XM_007253630.3 mRNA upstream 31960 5143765 ~ 5173256 (+) True gabra6
XM_007253631.3 mRNA upstream 74659 5123954 ~ 5130557 (+) True ccng1
XM_007253633.2 mRNA upstream 87377 5091878 ~ 5117839 (+) True LOC103040455
XM_007253634.2 mRNA upstream 93201 5091881 ~ 5112015 (+) False LOC103040455
XM_022671993.1 mRNA upstream 122610 5068901 ~ 5082606 (+) True LOC103041177
XM_022671997.1 mRNA downstream 132573 5339650 ~ 5408015 (+) True atp10b
XM_022671999.1 mRNA downstream 223612 5430689 ~ 5476431 (+) True atp7a
XM_007253628.3 mRNA downstream 273311 5480388 ~ 5485164 (+) True LOC103038898
XM_007253644.3 mRNA downstream 284345 5491422 ~ 5494564 (+) True LOC103044251
XM_015606961.2 mRNA downstream 465641 5672718 ~ 5678874 (+) True LOC103037414
LOC111193046 other upstream 225194 4979467 ~ 4980022 (+) True LOC111193046
TU96113 other upstream 225205 4956298 ~ 4980011 (+) True G71247
TU96114 other upstream 225205 4956298 ~ 4980011 (+) False G71247
TU96122 other upstream 237309 4963702 ~ 4967907 (+) True G71249
LOC111193076 other upstream 248190 4956279 ~ 4957026 (+) True LOC111193076
TU96351 other downstream 292831 5499908 ~ 5505638 (+) True G71414
trnaa-agc_14 other downstream 829725 6036802 ~ 6036874 (+) True trnaa-agc_14
trnaa-agc_15 other downstream 830599 6037676 ~ 6037748 (+) True trnaa-agc_15
TU96736 other downstream 1318564 6525641 ~ 6538794 (+) True G71682
TU96877 other downstream 1674510 6881587 ~ 6885541 (+) True G71788

Expression Profile