RNA id: TU96198


Basic Information

Item Value
RNA id TU96198
length 2607
lncRNA type intronic
GC content 0.42
exon number 2
gene id G71304
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 5295678 ~ 5298321 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGTATGTGAAACAGATACAGGTATGTGAGAGAGACGCAGAAGAGGAGGGAATGGCTAGAGAGTTATTTATgagatttaattcatatttcaacataccatatttttcagattataaagcacaccgtttcaatgaacgtctattttctggtctattctcatacataaggcacactggattataaggcgcattttaagagacactataaggaacttctgaTTTAGCAGGTCTCTCCgatgggtggtggtggggggtagctaactaatttaagtaaagctaagctaagtaagtcttttaaagtcaaataaatgctggatgttaatctacacagatttctctcctgaaaactcctgtttatttgggtgagtaaagcacttccatttatgtACAGTTAGCCTAGACTcctgaattagcattagcattagcattagcggctaatgccacccgagaaaccctgagtgttcttaGCCTGTTTTAACATGGTGAACACGCGGACTACAgcccgatatactcacctctgaacgacaaaggagctagcatggttagcggctaatgctaatgcaaccccagtactggagaactaaactgaaactcctgaataacactgtatttcagcagagtggctttactgcttcttacaacctgactggtaaaatttatacataaggtgcacgggattaaaaggtgcactgacgattttgggggaaattaaaggattttaagtgcgttttatagtgcaaaaaatatggtaatttaaGTGTAATCTAACTCCTGAACTCAACAGTAGTGTCAGTCTGTTAATATTGCTAAATAAAACCAAAGAGGGAATTACAGGAGGAAGCCAAAACCaaactttattaatttttattcaattattaattaaatatccaagtgtttttttgttttagctaCAACATTTTTACTGATGTCtacatgtttgtggacacccaaACTGATCAATACATTTAGCTCCattaagctaagttaagttgCAGCCATTGCAGTCCTCCAGTAGAAAATGAGGATGTCCTGTGATCAGGGCTTTGTGGCCAGTTTATCCcagtttattattttaggtcGGGTTCTGTAGACCTTCAGTAGATGTCATGGCTGTGTAGCAAAAATGGTCCTGCAGACCATTGGCTAAATATTAGGGGTTTGGGCTCTTATTGATCACAAAAGCTTGAAATTAGAACTGATTCAAAGAACAGTAGCACAATAATGTGACTGTTTTTTAGGGATTAATATTTTAGACTATAGTGTTGATGTCAGAATTAGTTAGCCatgtaattagttactgtaTTTTGGGCTGGTCCTGTAAACCATGGACTTTACATTGGGCTGGTTCTGTTGGGACTTTCTCTGGCAAAGCAGGgtcatactatatatatatatatatatatatatatatataatatatatatataatatatatatatatatatatatagggtatATCCAGCAAAACAAAGGAGAAGGTAAAAGAGGaggcaaaaatacaaaagcCAAAAGATAATAAACAGAGATACAAAAAAGGGTCTGTAACAAAAAGGCAAAATCAGAGTTAGGAAagctagattcaatactcagcaatgaACTGAGcaaaaagtactgaaaactCTTTTTATATACTAGTGAGGACAGGTGGAGCTAATTAGTAACTCGGAGAGTGGGAACGCAGTAGTGTCATGTGTCATGAGTGGAATCAGTGGAGTCAGTGAAGTCTGGTgttggtgcatgctgggaagtggagtctttAGAGAACAGTTCGAGTTTAGAGTTAGACCATAAGCTTGATATGAGGACGGTTTCTGTAGGGCATGATGATTCATTAGAATGGGTGTCCAAAAGCAGTAGTGCACATTTTGTACAGTATATCGGGAGCATATAGGGACTTTTGGGATTTTGGGTTTGGGATTTTGCCATCTTGACTTTAAGTAGGAAGCATTTGATCACAAGTCCTTTGGGAACCAAATGGGGCTGCTGCAAACGTCCAGTCCAGGACGCGAGGGTGATATTTGTGCAGCGTTCCTCCTCGGTTCCTCTGCAGGCAGGTGATCAGAATGCTGGAACAGTCCTCCAGAAGAAAATGAGGACGTCCTGTGATCAGGGCTTTGTGGCAGCCAGTTTATCCCCAAACTAGATTAGATGGAGGCTGGGCTGGCGTGGGTGTGGAAATTGCCTGGCTCCAATAAAGCAGGAGAACAGTCAGGGTGTCCTGTGAAGGCGGCGGGACGTCGCTGGGAGAGAAGCCGTCCTGCTCTGAGCGCCATTAAAGAGTGCACGGGCGGATCCCCTCTGATCTGCTGCCTCTGATTGCGCCGACAAACTCTCGGCCGGATGGTCGTTACCGGTGTGTTTTCTGGCTAATAGGGCCGTGTTCTGGCGTGATGAAAAAGTGCCCGTCTCCTCCAGCGGTCCTGCGGGGGGGAGCGGGAGATAGGATAGGTGAGTGATGAGCACGGGAGCGGTTTAGAGTTTTGGGTTTGCCTGTCACAATCAATCTGTCTGCACGGAGAGCCGGGTGACAGCTGAACAGATGCTACAGCCTCCGCGTGCTGTTTAGAGTGAAATACAATAGCTCTATTAGAAGCCTGAGAAAGTCTGTC

Function

GO:

id name namespace
GO:0045202 synapse cellular_component
GO:0016775 phosphotransferase activity, nitrogenous group as acceptor molecular_function
GO:0000155 phosphorelay sensor kinase activity molecular_function
GO:0004673 protein histidine kinase activity molecular_function

KEGG:

id description
ko05033 Nicotine addiction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96186 lncRNA upstream 88601 5205216 ~ 5207077 (+) True G71294
TU96175 lncRNA upstream 158111 5133735 ~ 5137567 (+) True G71287
TU96138 lncRNA upstream 251920 5001091 ~ 5043758 (+) True G71260
TU96119 lncRNA upstream 289453 4958156 ~ 5006225 (+) True G71248
TU96333 lncRNA downstream 25348 5323669 ~ 5324887 (+) True G71397
TU96347 lncRNA downstream 110710 5409031 ~ 5410313 (+) True G71411
TU96348 lncRNA downstream 110710 5409031 ~ 5410023 (+) False G71411
TU96416 lncRNA downstream 229675 5527996 ~ 5532969 (+) True G71473
TU96417 lncRNA downstream 230134 5528455 ~ 5532295 (+) True G71474
XM_007253630.3 mRNA upstream 122422 5143765 ~ 5173256 (+) True gabra6
XM_007253631.3 mRNA upstream 165121 5123954 ~ 5130557 (+) True ccng1
XM_007253633.2 mRNA upstream 177839 5091878 ~ 5117839 (+) True LOC103040455
XM_007253634.2 mRNA upstream 183663 5091881 ~ 5112015 (+) False LOC103040455
XM_022671993.1 mRNA upstream 213072 5068901 ~ 5082606 (+) True LOC103041177
XM_022671997.1 mRNA downstream 41329 5339650 ~ 5408015 (+) True atp10b
XM_022671999.1 mRNA downstream 132368 5430689 ~ 5476431 (+) True atp7a
XM_007253628.3 mRNA downstream 182067 5480388 ~ 5485164 (+) True LOC103038898
XM_007253644.3 mRNA downstream 193101 5491422 ~ 5494564 (+) True LOC103044251
XM_015606961.2 mRNA downstream 374397 5672718 ~ 5678874 (+) True LOC103037414
LOC111193046 other upstream 315656 4979467 ~ 4980022 (+) True LOC111193046
TU96113 other upstream 315667 4956298 ~ 4980011 (+) True G71247
TU96114 other upstream 315667 4956298 ~ 4980011 (+) False G71247
TU96122 other upstream 327771 4963702 ~ 4967907 (+) True G71249
LOC111193076 other upstream 338652 4956279 ~ 4957026 (+) True LOC111193076
TU96351 other downstream 201587 5499908 ~ 5505638 (+) True G71414
trnaa-agc_14 other downstream 738481 6036802 ~ 6036874 (+) True trnaa-agc_14
trnaa-agc_15 other downstream 739355 6037676 ~ 6037748 (+) True trnaa-agc_15
TU96736 other downstream 1227320 6525641 ~ 6538794 (+) True G71682
TU96877 other downstream 1583266 6881587 ~ 6885541 (+) True G71788

Expression Profile