RNA id: TU96199


Basic Information

Item Value
RNA id TU96199
length 1452
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G71305
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 4933457 ~ 4935045 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGATGTTGCTCGGATGAGTTTTTATTGAAAcggaacaaacaaaaaataaaagttataaataCAAACATCAGAGAACAAACTGTCACGGCTCTTAAGGTGAGCCAAACCAAGTCCTAACGAGCAAATttcaaaaaaaaaggagagaaaaaaaacgttTGAAGTTGTtatatcagtttttaaaaaacacaattgaACTACTTCTAGAAATGCTAAACATACACGTTTAATGGTACTTCCAGCTACAAAACTTTTTTCCTTCCAGTGGATTCTTTTCTCCActtctgaaaaaagaaaaaaatgaaaatgaagctaaaGCTGACAGCCATTATTTACAAGCAAGTCCCTATGCCACTAGCAGAAAtcacagagaaatagagagaaatagagagatagagcaaGCGACGGGGTAAGGGGGACATAAGAAGGTGTCCAGTATGGGGGGACAGGTGGGTGGTTGGGTGAGTTGAATGTTTGGACATGAGCTTTCTGCAAGACCATTTCATGATTTTAATGTTCTCTCAGACTGTTAtgcttgtttattttattactttttcttttttttttttagacgtcAAAAAGTCcttgtttctttaaaatgttcgTTGCTGGctttaaaacaaagaacaaatggAAGGGATAAAAGTGGAGTATGATTTAAGACAAATGTCCCGGTCAGGCCTGTGTGTAAGCAAACCAATCAGGGGCAGGAGGAGGATCGGATACATTCTTGTCTTCAGCCAAAACGTActttcagccaatcaggatTTGTGATGCCAATTCTGGGGGGGCGTGTCCTTTTTGTGTCACTGACATATTCTTTTTGTGTTGCTGTTTGTGTCTTCTACTTCCACTGCTGGCCATAGGAATCCTGGGAGAACTCCAGAGTGTCGTTGCTGTAACCGTAGTTGCCAGCGTAGTCGCCACCTTGCTGTAACGGCTGCTGAGCGATAGGCTGTGACCCCCAGTTCTGCTGGTTGGTCGTCTGGCGGCGCTTCGAGTCGGGTTGGTTGAACACGTCAGCCTTCCTTTTCCCGCCAACATTTCCGCCGCGGTTTCCGCGGGCCCCCCTGGTGCCACGCCCCCTAGGAGGCTGGAAGGGTCCGCCACGTCCCCCACCACGCCCTCCTCGGCCTGCTCCCATGGGAGCACCTCCTCTTGGCGCGTAGCCACCTCTTCCACCACGGGCTGGAGGTACACCACGTGCTCTAGGAGGGGGTGGAGCACCACGGCTACCACGACTGCCACGCCCCCTCATGGTATACATGTCGTCATAACCATAGTAAGGGTCATCATAGCCGCCACGATAGTCGTGGTAATCATAGCCATAGTAGTCGTCATAATACTCTTCATAGCCATAGTAGTCAGGAGGGTACGCATAGCCTCCCCTCCCCCCTCGGCCACGCCCACGCCCTGGAGGTGGCATGCGGGGAGGAGGGTAATAGTAATAGTCGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96201 lncRNA downstream 1290 4911620 ~ 4932167 (-) True G71307
TU96204 lncRNA downstream 11638 4919555 ~ 4921819 (-) True G71309
TU96097 lncRNA downstream 46996 4886188 ~ 4886461 (-) True G71237
TU96078 lncRNA downstream 190944 4695742 ~ 4742513 (-) True G71222
TU96063 lncRNA downstream 254708 4678391 ~ 4678749 (-) True G71210
TU96202 lncRNA upstream 1592 4936637 ~ 4939375 (-) True G71308
TU96214 lncRNA upstream 5863 4940908 ~ 4941780 (-) True G71315
TU96216 lncRNA upstream 8258 4943303 ~ 4954873 (-) True G71316
TU96219 lncRNA upstream 21251 4956296 ~ 4980099 (-) True G71319
TU96234 lncRNA upstream 49962 4985007 ~ 4986652 (-) True G71324
XM_007236447.3 mRNA downstream 470485 4447172 ~ 4462972 (-) True LOC103026470
XM_022671978.1 mRNA downstream 1022928 3862118 ~ 3910529 (-) False LOC103042532
XM_022671977.1 mRNA downstream 1022928 3862118 ~ 3910529 (-) True LOC103042532
XM_022671903.1 mRNA downstream 1084833 3736626 ~ 3848624 (-) True LOC103042226
XM_022671976.1 mRNA downstream 1291576 3633716 ~ 3641881 (-) True LOC103023864
XM_022671989.1 mRNA upstream 23060 4958105 ~ 5013867 (-) True LOC103041488
XM_022671988.1 mRNA upstream 26544 4961589 ~ 4975625 (-) True LOC111193075
XM_022671987.1 mRNA upstream 26544 4961589 ~ 4967939 (-) False LOC111193075
XM_022671990.1 mRNA upstream 68297 5003342 ~ 5013867 (-) False LOC103041488
XM_022671991.1 mRNA upstream 79827 5014872 ~ 5046137 (-) True kdm1b
trnaw-cca_42 other downstream 9386 4924000 ~ 4924071 (-) True trnaw-cca_42
TU96095 other downstream 48969 4882170 ~ 4884488 (-) True G71235
TU96020 other downstream 520446 4411948 ~ 4413011 (-) True G71175
TU95798 other downstream 1126358 3769161 ~ 3807099 (-) False LOC103042226
TU95670 other downstream 1579858 3347800 ~ 3353599 (-) True G70924
TU96400 other upstream 536621 5471666 ~ 5476375 (-) True G71458
TU96529 other upstream 894576 5829621 ~ 5841687 (-) True LOC103035656
TU96859 other upstream 1842194 6777239 ~ 6824756 (-) True G71771
TU96917 other upstream 2122065 7057110 ~ 7057643 (-) True G71826
TU96981 other upstream 2374730 7309775 ~ 7312926 (-) True G71862

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000117_00666709_00671977.mRNA True 2145 mRNA 0.53 10 CI01000117 666709 ~ 672643 (+)