RNA id: TU96333


Basic Information

Item Value
RNA id TU96333
length 1219
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G71397
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 5323669 ~ 5324887 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tttgtctttatggcagaggtctagctaaataaatacaaatttcacaccacacacactgcactcattctgctgaggtaactattattatttacaagtacatctttacacattactgtaggtagaaaagaaaaaaaaatactaaggaaaatgtatcaaatatactatgtatacaaaatacaaaaacctgcaaaaacaaaacaaaaaacagtcaagCATCACAAATGCAATACAGTAAAATTTTGAATATTCTGTgtcactcccctctctctcctggTCATCTTCCTGGCCATCCATCCACTGCAGTCTCTTTGGCTATAAATTCTCATCAACATCGCAtctgatgtgttctttagcaatgCACTGTGGGAAGAAGCGTTGTGAATGCCTGAGCCACCTGTCAGGTAACAAACTGATGGATTGGTCACCTGTAATGTGGGACACTCCTCCTCgtcaaaacctgctttcacctgttacctactcacctgattgtcatgaatttatgaaatgttccaaaatatgtgtactgtattgtattacaatttcttaaCTCATTTTGACAATTGAGCAGactattctgcagatgatgacttatacgatgaaattgtgctgacatgttttgGAGAGAACAACCATTACACTGAGAACCGACCAATTGGGATAGATCAACAAGATgcattcttttggaaaatgtactaaatgtagaatgattgtgttaagtgtaggctacttgtacataaccatttgcaaagatgtactaagtgcttgagacatgtacaaagcatttgaaatgtgatgaaagcaatgagaaatgccattctgttATGAGGAACCGCAAGTTAGTTTGGGGATTTAtccatgttattttgagaatgtcatctcagtttcaagaaatgagccaaaccaattgagaaaaactgtaaggaATGCCccgtcactagtgatgccacaaagCCAGGAGggggaagactagcacatgcctcctccgatacatgtgaagtcagactccgcctctgcctttttgaactgctgctgatgcagcattgccaaatgGCATCACACCGCgcttggagaaaagcgcagcaactcggttctgatacatcagctcacagaggcagccttgtgctgagagacatcaccctttggagtgatgtagggaaagagcaccatctacccacccagagagagcaaggccaactgtgctctcttagggctccggcag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96198 lncRNA upstream 25348 5295678 ~ 5298321 (+) True G71304
TU96186 lncRNA upstream 116592 5205216 ~ 5207077 (+) True G71294
TU96175 lncRNA upstream 186102 5133735 ~ 5137567 (+) True G71287
TU96138 lncRNA upstream 279911 5001091 ~ 5043758 (+) True G71260
TU96132 lncRNA upstream 330490 4990852 ~ 4993179 (+) True G71256
TU96347 lncRNA downstream 84144 5409031 ~ 5410313 (+) True G71411
TU96348 lncRNA downstream 84144 5409031 ~ 5410023 (+) False G71411
TU96416 lncRNA downstream 203109 5527996 ~ 5532969 (+) True G71473
TU96417 lncRNA downstream 203568 5528455 ~ 5532295 (+) True G71474
TU96438 lncRNA downstream 278233 5603120 ~ 5603321 (+) True G71489
XM_022671995.1 mRNA upstream 10011 5182599 ~ 5313658 (+) True gabrb2
XM_022671996.1 mRNA upstream 11679 5182503 ~ 5311990 (+) False gabrb2
XM_007253630.3 mRNA upstream 150413 5143765 ~ 5173256 (+) True gabra6
XM_007253631.3 mRNA upstream 193112 5123954 ~ 5130557 (+) True ccng1
XM_007253633.2 mRNA upstream 205830 5091878 ~ 5117839 (+) True LOC103040455
XM_022671997.1 mRNA downstream 14763 5339650 ~ 5408015 (+) True atp10b
XM_022671999.1 mRNA downstream 105802 5430689 ~ 5476431 (+) True atp7a
XM_007253628.3 mRNA downstream 155501 5480388 ~ 5485164 (+) True LOC103038898
XM_007253644.3 mRNA downstream 166535 5491422 ~ 5494564 (+) True LOC103044251
XM_015606961.2 mRNA downstream 347831 5672718 ~ 5678874 (+) True LOC103037414
LOC111193046 other upstream 343647 4979467 ~ 4980022 (+) True LOC111193046
TU96113 other upstream 343658 4956298 ~ 4980011 (+) True G71247
TU96114 other upstream 343658 4956298 ~ 4980011 (+) False G71247
TU96122 other upstream 355762 4963702 ~ 4967907 (+) True G71249
LOC111193076 other upstream 366643 4956279 ~ 4957026 (+) True LOC111193076
TU96351 other downstream 175021 5499908 ~ 5505638 (+) True G71414
trnaa-agc_14 other downstream 711915 6036802 ~ 6036874 (+) True trnaa-agc_14
trnaa-agc_15 other downstream 712789 6037676 ~ 6037748 (+) True trnaa-agc_15
TU96736 other downstream 1200754 6525641 ~ 6538794 (+) True G71682
TU96877 other downstream 1556700 6881587 ~ 6885541 (+) True G71788

Expression Profile