RNA id: TU96348


Basic Information

Item Value
RNA id TU96348
length 993
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G71411
representative False

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 5409031 ~ 5410313 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GATTCTTCAGTTCTGCCTTTACATAAATTGTTCAGTCTCCAACAATACACCTAACACTGAagtctgtataaaaaaaatacaaacaaaagcaGAGTTGTTCATAGTCGTAGCAGAAAGTAAGAAAAGCCCCTATCAAAAGACAGCTTAATCGTACTGACATTCAATTCACAAAGGAGACAGAACAAAACAGAGTTATGTAATCTCTGCagctgagagaaagagggagagagagtgagggagtaagagagaaagagaaagagagagagagggagcaacgTCTGAGACTTCACCTCTTTTACTTACCATACACACAAAACTGACTCTACCTGTTCTGCTGTGGACCGCCCACACCTACACCCTGCCCTGACTCTGCAcacttctcctccttctcctcctcctccacagctccttcctacttcCTAATCCTGTATGGGGAGAGTGTCAGGGAGGGGTTTAAAAAATGCAGCTGCAGCAAGAGGACACTACAGGACTCTCTCCACTCTCTACTGCAAATGCCTGTCTGAGCTTCATGAATTATTCTGTCAATATCTCCAGCCTGTATCGAGTAAAAGTCAGATTTCTGTGAGGAGGGTGGTCTGCCATTATGTCCGACTCCCTGAAACACAACCTCggttaataaaacataaagtcACATTTCCACTTGAACTGACATCTCATTCCTTTACGCAGCTTGGGGGCcttcaaacaacaaaaaaaggtgaccCCGCCAAAAACATCCCCAGTCCCATCTTCTCTGTCTGTCCAAGATATTGACAGCTCATTTTGGATGGACTTCATGTGTCCTATCCACAgtttttgtccaaaaaaaaaacatgcacaccCAGTCTGGTGTGTCCGTATCATTATGTCCAAGCAAttgtaatgtgtgtatgtgtgtgtgtgtgtgtgcgtgtgtgtgtgtttgcatacgTATGTCTGTACttgtacagctctggtaaaaaataagagaccacttaaaaatgatgagtttct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96333 lncRNA upstream 84144 5323669 ~ 5324887 (+) True G71397
TU96198 lncRNA upstream 110710 5295678 ~ 5298321 (+) True G71304
TU96186 lncRNA upstream 201954 5205216 ~ 5207077 (+) True G71294
TU96175 lncRNA upstream 271464 5133735 ~ 5137567 (+) True G71287
TU96138 lncRNA upstream 365273 5001091 ~ 5043758 (+) True G71260
TU96416 lncRNA downstream 117973 5527996 ~ 5532969 (+) True G71473
TU96417 lncRNA downstream 118432 5528455 ~ 5532295 (+) True G71474
TU96438 lncRNA downstream 193097 5603120 ~ 5603321 (+) True G71489
TU96439 lncRNA downstream 197695 5607718 ~ 5607946 (+) True G71490
TU96445 lncRNA downstream 264778 5674801 ~ 5678827 (+) False LOC103037414
XM_022671997.1 mRNA upstream 1016 5339650 ~ 5408015 (+) True atp10b
XM_022671995.1 mRNA upstream 95373 5182599 ~ 5313658 (+) True gabrb2
XM_022671996.1 mRNA upstream 97041 5182503 ~ 5311990 (+) False gabrb2
XM_007253630.3 mRNA upstream 235775 5143765 ~ 5173256 (+) True gabra6
XM_007253631.3 mRNA upstream 278474 5123954 ~ 5130557 (+) True ccng1
XM_022671999.1 mRNA downstream 20666 5430689 ~ 5476431 (+) True atp7a
XM_007253628.3 mRNA downstream 70365 5480388 ~ 5485164 (+) True LOC103038898
XM_007253644.3 mRNA downstream 81399 5491422 ~ 5494564 (+) True LOC103044251
XM_015606961.2 mRNA downstream 262695 5672718 ~ 5678874 (+) True LOC103037414
XM_015606960.2 mRNA downstream 262709 5672732 ~ 5678874 (+) False LOC103037414
LOC111193046 other upstream 429009 4979467 ~ 4980022 (+) True LOC111193046
TU96113 other upstream 429020 4956298 ~ 4980011 (+) True G71247
TU96114 other upstream 429020 4956298 ~ 4980011 (+) False G71247
TU96122 other upstream 441124 4963702 ~ 4967907 (+) True G71249
LOC111193076 other upstream 452005 4956279 ~ 4957026 (+) True LOC111193076
TU96351 other downstream 89885 5499908 ~ 5505638 (+) True G71414
trnaa-agc_14 other downstream 626779 6036802 ~ 6036874 (+) True trnaa-agc_14
trnaa-agc_15 other downstream 627653 6037676 ~ 6037748 (+) True trnaa-agc_15
TU96736 other downstream 1115618 6525641 ~ 6538794 (+) True G71682
TU96877 other downstream 1471564 6881587 ~ 6885541 (+) True G71788

Expression Profile