RNA id: TU96351


Basic Information

Item Value
RNA id TU96351
length 1356
RNA type TUCP
GC content 0.43
exon number 6
gene id G71414
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 5499908 ~ 5505638 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aaaaaaaaaaaaaagcgtatgaaccctgtataatttttaatttattattcctTATTAATGAAACACCAGGACtgatagaagaagaaaaaaatacccaCTGAGTGGAATGCTTCACTAATCAATATGAAAGTCATATTTGAGGGACGGTTAGGTTTAATGGCTTCAGAGCGGATAGTGCACATCCCTTTAGCTGCTGCAGCAGAATCACTGCTTGCCGTTGCCGTTGATGGGAAGTTTCTTGTAGTCCTCAGAGTCCAGGAAAGCCTTGATCTTGGGACGGGCGGACAGTGTATCCACAAAGCTCTTAAGAGCAGGGAGAGAGTCCAGGCAAGTGGGGCTCAGCACCAGGTGGTTCAGCAACACCTCAAACAGGCTGTAGTCTGCGAAGGAGATCTTCTCCAACGAGGAAGCCACTTTTGTTCTTGGCCAGAACAGCCTCAAACTTGCACAGGTGGTTGGGCAGGTCCTTGATGTATGCGTCTTTTCCAGTCTcATTCCTGGTAGATCATCTTCAAGTATTTGGTGCGAAGATCTTCAACTCCATCGTTGAACATGTCGATCTGAGCAGCTTCACAGTCATTCTTTCCGTAAGCCCCGTGTTTGCGACCCAGATGCCTCAAGAAGGTATTGGACTGAAACAAAGTCAGGCCACCATCCTCAAATTTGGGCAGCTGACCAACACGCAGGTTTTCTTCAGGTCTCCCTTCATCCAGTCCTCGAAGGACACAACAATCTCCTTCCACTCCTGCCCCTGATCAGCCAGCATGATCCGCGTCGCACCACATCGCCCTGTCACAACACAGGACACCAGAACATTAAGTCAGAAGGATATTACTGTGGCCAGTGCACACTTAGAGCACTAAATCCTATAGAGGTGATTAATAACTgtttagatatacagctctggaaacaattaagagaccacttcagtttctgaatcagtttatctgattttgctatttataggtttatgtttgagtaaaataaacattgttgttttattctataaattacagacaacatttctcccaaattccaaaaaaatacattgtcatttagagcatttatttacagaaaatgagaaatggctgaaataacaaaaaaaaaaaaaaagccaaaaatatgCGATATTAGCTGGAATAATTctttttaagcacagttttcatgcatctgtgCACCATGCATTTCATGCatttcacgcaccatgtggcctcggttgctcgatcctgccgcttcgcgctttataacatcaggaaaattagacagtttctgatgaaacaggccacccaactcctggtacaagcagtcgtcatctcacacctcgactactgcaatgccctgctaactggcctcccg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96347 lncRNA upstream 89595 5409031 ~ 5410313 (+) True G71411
TU96348 lncRNA upstream 89885 5409031 ~ 5410023 (+) False G71411
TU96333 lncRNA upstream 175021 5323669 ~ 5324887 (+) True G71397
TU96198 lncRNA upstream 201587 5295678 ~ 5298321 (+) True G71304
TU96186 lncRNA upstream 292831 5205216 ~ 5207077 (+) True G71294
TU96416 lncRNA downstream 22358 5527996 ~ 5532969 (+) True G71473
TU96417 lncRNA downstream 22817 5528455 ~ 5532295 (+) True G71474
TU96438 lncRNA downstream 97482 5603120 ~ 5603321 (+) True G71489
TU96439 lncRNA downstream 102080 5607718 ~ 5607946 (+) True G71490
TU96445 lncRNA downstream 169163 5674801 ~ 5678827 (+) False LOC103037414
XM_007253644.3 mRNA upstream 5344 5491422 ~ 5494564 (+) True LOC103044251
XM_007253628.3 mRNA upstream 14744 5480388 ~ 5485164 (+) True LOC103038898
XM_022671999.1 mRNA upstream 23477 5430689 ~ 5476431 (+) True atp7a
XM_022671997.1 mRNA upstream 91893 5339650 ~ 5408015 (+) True atp10b
XM_022671995.1 mRNA upstream 186250 5182599 ~ 5313658 (+) True gabrb2
XM_015606961.2 mRNA downstream 167080 5672718 ~ 5678874 (+) True LOC103037414
XM_015606960.2 mRNA downstream 167094 5672732 ~ 5678874 (+) False LOC103037414
XM_007253622.3 mRNA downstream 191281 5696919 ~ 5731315 (+) True LOC103037091
XM_022672009.1 mRNA downstream 365452 5871090 ~ 5957015 (+) False LOC103043949
XM_022672011.1 mRNA downstream 365613 5871251 ~ 5957015 (+) True LOC103043949
LOC111193046 other upstream 519886 4979467 ~ 4980022 (+) True LOC111193046
TU96113 other upstream 519897 4956298 ~ 4980011 (+) True G71247
TU96114 other upstream 519897 4956298 ~ 4980011 (+) False G71247
TU96122 other upstream 532001 4963702 ~ 4967907 (+) True G71249
LOC111193076 other upstream 542882 4956279 ~ 4957026 (+) True LOC111193076
trnaa-agc_14 other downstream 531164 6036802 ~ 6036874 (+) True trnaa-agc_14
trnaa-agc_15 other downstream 532038 6037676 ~ 6037748 (+) True trnaa-agc_15
TU96736 other downstream 1020003 6525641 ~ 6538794 (+) True G71682
TU96877 other downstream 1375949 6881587 ~ 6885541 (+) True G71788
TU97487 other downstream 3637261 9142899 ~ 9149419 (+) True G72281

Expression Profile