RNA id: TU96438


Basic Information

Item Value
RNA id TU96438
length 202
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G71489
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 5603120 ~ 5603321 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

acaaatcagagaacctaaactaaaccaactagagaataaaataataaacagggaatatatacaagagaaggactagaaataaacaaggaaataaacaagaagctaaactagacaaggtaaaactaaactaagcagggcaagggaaacaaacaaggaataaacacggAACTAGGGCTTTAGCAACACAGAAAcgcggagagac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96416 lncRNA upstream 70151 5527996 ~ 5532969 (+) True G71473
TU96417 lncRNA upstream 70825 5528455 ~ 5532295 (+) True G71474
TU96347 lncRNA upstream 192807 5409031 ~ 5410313 (+) True G71411
TU96348 lncRNA upstream 193097 5409031 ~ 5410023 (+) False G71411
TU96333 lncRNA upstream 278233 5323669 ~ 5324887 (+) True G71397
TU96439 lncRNA downstream 4397 5607718 ~ 5607946 (+) True G71490
TU96445 lncRNA downstream 71480 5674801 ~ 5678827 (+) False LOC103037414
TU96473 lncRNA downstream 197082 5800403 ~ 5859364 (+) False G71518
TU96489 lncRNA downstream 221113 5824434 ~ 5828822 (+) True G71527
TU96492 lncRNA downstream 225567 5828888 ~ 5841703 (+) True G71528
XM_007253644.3 mRNA upstream 108556 5491422 ~ 5494564 (+) True LOC103044251
XM_007253628.3 mRNA upstream 117956 5480388 ~ 5485164 (+) True LOC103038898
XM_022671999.1 mRNA upstream 126689 5430689 ~ 5476431 (+) True atp7a
XM_022671997.1 mRNA upstream 195105 5339650 ~ 5408015 (+) True atp10b
XM_022671995.1 mRNA upstream 289462 5182599 ~ 5313658 (+) True gabrb2
XM_015606961.2 mRNA downstream 69397 5672718 ~ 5678874 (+) True LOC103037414
XM_015606960.2 mRNA downstream 69411 5672732 ~ 5678874 (+) False LOC103037414
XM_007253622.3 mRNA downstream 93598 5696919 ~ 5731315 (+) True LOC103037091
XM_022672009.1 mRNA downstream 267769 5871090 ~ 5957015 (+) False LOC103043949
XM_022672011.1 mRNA downstream 267930 5871251 ~ 5957015 (+) True LOC103043949
TU96351 other upstream 97482 5499908 ~ 5505638 (+) True G71414
LOC111193046 other upstream 623098 4979467 ~ 4980022 (+) True LOC111193046
TU96113 other upstream 623109 4956298 ~ 4980011 (+) True G71247
trnaa-agc_14 other downstream 433481 6036802 ~ 6036874 (+) True trnaa-agc_14
trnaa-agc_15 other downstream 434355 6037676 ~ 6037748 (+) True trnaa-agc_15
TU96736 other downstream 922320 6525641 ~ 6538794 (+) True G71682
TU96877 other downstream 1278266 6881587 ~ 6885541 (+) True G71788
TU97487 other downstream 3539578 9142899 ~ 9149419 (+) True G72281

Expression Profile