RNA id: XM_015606960.2


Basic Information

Item Value
RNA id XM_015606960.2
length 749
RNA type mRNA
GC content 0.42
exon number 7
gene id LOC103037414
representative False

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 5672718 ~ 5678874 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCTCAGAGCTCAGTGATGAATTACAGACTGCAGCTCTCAGGAGAACCAGTGAAGAGAACCAGTAAGGAGATCCAGTAAAGAGATCACAGTTTTGTCAGACATGGCAGATAAAGAATTTAAGGCAAATTTCCTGGCCAAGCATAACGAGTACAGGAAGAAACATGGAGTTCCTGAAGTGACTTTAAGTGAAGATCTGTGCGACTCTTCACAGAAGTGGGCCGATCATTTACTGTCCATCAAAACCCTGCAGCACAGCGAGACCAGCAACGGAGAGAACGTCTTCTATTCCTGGAGCTCCAAGACCACAAAACCCACAGGACCTGAAGCTGTGGAGAAGTGGTACAGTGAAATTAAGGACTACAATTTCAGCAAGCCTGGATTCCAGCCCAACACAGGACACTTCACTCAGGTAGTTTGGAAAGACTCTAAAGAGATTGGAGTGGGTCTGGCCACTGATGGGAATACCATCTTCGTGGTTGGTCAGTACAAGCCTGCTGGAAACGTAGCCAATCCAGGCTACTTTGAGAAGAACGTCTTACCTGCTGCAGacAACTAAGACAACACCCAACAGCCATACAAACCCCTACAATTACACAGATATGGATTTCTACTTGAATAATATTTTAAGTATCATTTGATAATAATCATACAAGTAATGCTGTAGAACCTCTAGGCATGATTTTTATACATGTTATgatgtcattttaaaaataaaacattgttaaataaaaacatatatcatatattgc

Function

GO:

id name namespace
GO:0071466 cellular response to xenobiotic stimulus biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96439 lncRNA upstream 64786 5607718 ~ 5607946 (+) True G71490
TU96438 lncRNA upstream 69411 5603120 ~ 5603321 (+) True G71489
TU96416 lncRNA upstream 139763 5527996 ~ 5532969 (+) True G71473
TU96417 lncRNA upstream 140437 5528455 ~ 5532295 (+) True G71474
TU96348 lncRNA upstream 262709 5409031 ~ 5410023 (+) False G71411
TU96473 lncRNA downstream 121529 5800403 ~ 5859364 (+) False G71518
TU96489 lncRNA downstream 145560 5824434 ~ 5828822 (+) True G71527
TU96492 lncRNA downstream 150014 5828888 ~ 5841703 (+) True G71528
TU96474 lncRNA downstream 165743 5844617 ~ 5859364 (+) True G71518
TU96537 lncRNA downstream 224526 5903400 ~ 5957019 (+) False LOC103043949
XM_007253644.3 mRNA upstream 178168 5491422 ~ 5494564 (+) True LOC103044251
XM_007253628.3 mRNA upstream 187568 5480388 ~ 5485164 (+) True LOC103038898
XM_022671999.1 mRNA upstream 196301 5430689 ~ 5476431 (+) True atp7a
XM_022671997.1 mRNA upstream 264717 5339650 ~ 5408015 (+) True atp10b
XM_022671995.1 mRNA upstream 359074 5182599 ~ 5313658 (+) True gabrb2
XM_007253622.3 mRNA downstream 18045 5696919 ~ 5731315 (+) True LOC103037091
XM_022672009.1 mRNA downstream 192216 5871090 ~ 5957015 (+) False LOC103043949
XM_022672011.1 mRNA downstream 192377 5871251 ~ 5957015 (+) True LOC103043949
XM_022672010.1 mRNA downstream 193719 5872593 ~ 5957015 (+) False LOC103043949
XM_022672012.1 mRNA downstream 283406 5962280 ~ 5987766 (+) True tmem173
TU96351 other upstream 167094 5499908 ~ 5505638 (+) True G71414
LOC111193046 other upstream 692710 4979467 ~ 4980022 (+) True LOC111193046
TU96113 other upstream 692721 4956298 ~ 4980011 (+) True G71247
trnaa-agc_14 other downstream 357928 6036802 ~ 6036874 (+) True trnaa-agc_14
trnaa-agc_15 other downstream 358802 6037676 ~ 6037748 (+) True trnaa-agc_15
TU96736 other downstream 846767 6525641 ~ 6538794 (+) True G71682
TU96877 other downstream 1202713 6881587 ~ 6885541 (+) True G71788
TU97487 other downstream 3464025 9142899 ~ 9149419 (+) True G72281

Expression Profile