RNA id: TU96474


Basic Information

Item Value
RNA id TU96474
length 1935
lncRNA type inter_gene
GC content 0.44
exon number 7
gene id G71518
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 5800403 ~ 5859364 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTAAAACTCCATCACATTGCAGGATCAGACTTTAGTAATCATTTTATTACACAGTTTTAATCAACACACAAAGCTCAACGAGCCTGTCAggaaattaaatatacagaagTTTGTCTGTGAGGAGTTGTGTCCTCTCACCCGGGGACCCAATCGAGTCTGTCTCAGCCATGTTAGCATCTAATTTCAACAAGAGCAGaggggaaacaaaaaaaatgcagctaaAATGGAACTAAGAGTTATTGGGGGGGGCAggagaagaaaaacaacaaaaaagtaaactCATAACACGTGCTTAACTAAGATTCTGCTTTAAATAACTGGTCCAAAATTCTCGAGAACAGTGAGAATGATGCTGAATTGGTCGTGGCTAAGGGAAGGGGTAAAGACAGTCTTGGTTATGGcaaatggaaaaacaaaaagtaactTATATTCATAGTATTCAAGTCCTTTAGAATGATCCAGAAGAGAGGACCCAAAGGTCCGACATTTTGCCATTAATAAACCTGCTATGATTTTAAAAGAATTCCTTATAGATTTTATACAAAAGATAGCCAGCATACACCCCTCCCCCCTCAGTCAATAGAaaggaacaaaacaaaaaataaaaataaaaaaaataaacccttTTCCTGATCCAAGATACATCTGGAAGCCCAGGAAACGgaataaatggaaaaatgtaaagaacGTATCCCTCAATTTCCACTATAATCACAAAACAGGggagataagaaaaaaaagaaaaacaaaaagaaaaagaatttcCCTCCCTCCCCAGTGCTTAAAAACAAGGAATGCTTTTAGAGTCATGAAGATTTTCAACTGCAAAAATTGAGACTGGCTGACCCTAAGCAGCAGGCACGTCACCATTGCTGCGACGGAGACGGTAAAGCAAGAGACATGGAGCGAAGAtttttcgtttgtttgttttcggGTGGGGGAGTTGGTGGGGTGGAGGGAAAACAGCTGGATTTGAGCTACAGTCGAAGTTTGAAAGTATGTACACCATGGCTACCAGGAGGGTGGGGTAAGGTGGGGAGTGGGGGGGAGGTGCTCTGGTGAGGGGAGGCGTGGCTTAAAGAAAGCACTCCAATGGAAACCAAcaagatctgtttttttttctttagctttttttttttttttttatctcttaaaCTTTCAAATCTCCCCTAACCTTAAGATGGAGAGGTGTAAATTTTTTTCCCGCCATGATTCTAACTCCAAAACTACATTGCATACTTTTGTGTCCATTCCCGAGCTATTCTGTTGTACTTTTCCCTGTCAGTCTTGTAGATGCGGGCAATCTCGGGTACTAAGGGGTCATCCGGATTGGGGTCGCACAGCAGAGAGCAGATTGACAAGAGTACTTTGGAGATGGTGAGGGCAGGTGACCACTGAGACCTTAGAATATCCAGACAGATGCTGCCATTGCTGTTGATATTTGGGTGGTAGATTCTTGTGGTGAAtgcaacCTTTGGCGGTTTGAAGGGGTAATCTGTGGGAAAGTGAATGGTCAAGAAGAACACCCCACCCTGGTAAGGACTGTCATTTGGTCCCATTATTGTGGCCTGCCAGTGAAACATGTCATCCCCTACTGGCCCTGCTGAGCACTGAGCAGGTGGGTCACGGCCCAAGTCGTGCAGTTCCTTATGAATTCTCTTCAGAGCCATTGTTGTTCCTGTGCTGCTGTCACCGAAACCGAACTACGCTCGATTTAAAAAGGCCAAAACGCCGACTGGTTCCCTCTAAACCGACACCGACCACCTCGCAACCTAAACCTGACAGTCCCTCGGATCAAGGCGGCCTGATGGAGCCGGTCGATACGGGGAGAAAACGTCTTTTTCTCAAGGCGAAACTGAAAGGGGCAGCTCGGCTAAAAAGCACAGAGAGAGTAAAGCGGCTCTTCCTCccgcaacagcagcagcagatgccGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96492 lncRNA upstream 2914 5828888 ~ 5841703 (+) True G71528
TU96489 lncRNA upstream 15795 5824434 ~ 5828822 (+) True G71527
TU96445 lncRNA upstream 165790 5674801 ~ 5678827 (+) False LOC103037414
TU96439 lncRNA upstream 236671 5607718 ~ 5607946 (+) True G71490
TU96438 lncRNA upstream 241296 5603120 ~ 5603321 (+) True G71489
TU96537 lncRNA downstream 44036 5903400 ~ 5957019 (+) False LOC103043949
TU96551 lncRNA downstream 107190 5966554 ~ 6018103 (+) True G71567
TU96550 lncRNA downstream 152858 6012222 ~ 6014382 (+) True G71566
TU96619 lncRNA downstream 172821 6032185 ~ 6036659 (+) True G71608
TU96622 lncRNA downstream 227210 6086574 ~ 6086987 (+) True G71611
XM_007253622.3 mRNA upstream 113302 5696919 ~ 5731315 (+) True LOC103037091
XM_015606961.2 mRNA upstream 165743 5672718 ~ 5678874 (+) True LOC103037414
XM_015606960.2 mRNA upstream 165743 5672732 ~ 5678874 (+) False LOC103037414
XM_007253644.3 mRNA upstream 350053 5491422 ~ 5494564 (+) True LOC103044251
XM_007253628.3 mRNA upstream 359453 5480388 ~ 5485164 (+) True LOC103038898
XM_022672009.1 mRNA downstream 11726 5871090 ~ 5957015 (+) False LOC103043949
XM_022672011.1 mRNA downstream 11887 5871251 ~ 5957015 (+) True LOC103043949
XM_022672010.1 mRNA downstream 13229 5872593 ~ 5957015 (+) False LOC103043949
XM_022672012.1 mRNA downstream 102916 5962280 ~ 5987766 (+) True tmem173
XM_007253601.3 mRNA downstream 149197 6008561 ~ 6011401 (+) True LOC103031741
TU96351 other upstream 338979 5499908 ~ 5505638 (+) True G71414
LOC111193046 other upstream 864595 4979467 ~ 4980022 (+) True LOC111193046
TU96113 other upstream 864606 4956298 ~ 4980011 (+) True G71247
trnaa-agc_14 other downstream 177438 6036802 ~ 6036874 (+) True trnaa-agc_14
trnaa-agc_15 other downstream 178312 6037676 ~ 6037748 (+) True trnaa-agc_15
TU96736 other downstream 666277 6525641 ~ 6538794 (+) True G71682
TU96877 other downstream 1022223 6881587 ~ 6885541 (+) True G71788
TU97487 other downstream 3283535 9142899 ~ 9149419 (+) True G72281

Expression Profile