RNA id: XM_007253617.3



Basic Information


Item Value
RNA id XM_007253617.3
length 639
RNA type mRNA
GC content 0.51
exon number 3
gene id LOC103035656
representative False

Chromosome Information


Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 5829621 ~ 5841707 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


TACGCAGTGTCAGAGCGGAGAGAGGGAGATCCGGGCAGCGACCTTGTAgatcagcttcagcttcagcttcagctctgcTAATATAAATCTCCCATTCACCTCATAAAccagctccagcacctccaCCATGCCCCTGCAGCTTTCCGCGCTCTCAGCACTCTCCAACCAGGCGGGGGTCTCCGGATTCAGGGTCTCTAAAGTGACTGCGGCTGTGGGGACCTTCCTGCTCACCAGGTACTTCAGCACACAGAGCTGCTCCAAGGGCAAAGTGAACCTGGAGCACAACAAAGACAGCGCTAAAGTGGTGCACAGCTTCGACATCGAGGACATCGGCAAGAAGGCCGTCTACTGCCGCTGCTGGAGGTCCAAGAAGTTCCCCTACTGTGATGGtgcacacactaaacacaatgAGGAGACCGGAGACAACGTAGGTCCTCTCATCATCAAGAGGAAAGATGCATAATCTGCTCCGCCTGCCTGGTGCTgctgtgttaaatgtgttaagGGTCATGTGTTCTATGAGAATGTGCATTCATACCCACATGTCATTACAGGGTCCTCTCATTCCTGTATCTTCTCATATACTGTACAGAATTTTGGGAAATGCTAAAAtcacaaatacagtattttttcaaGCTC

Function


GO:

id name namespace
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0051537 2 iron, 2 sulfur cluster binding molecular_function

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU96453 lncRNA downstream 149979 5679805 ~ 5680110 (-) True G71501
TU96448 lncRNA downstream 151216 5642890 ~ 5678873 (-) True G71496
TU96437 lncRNA downstream 230137 5599714 ~ 5599952 (-) True G71488
TU96415 lncRNA downstream 302215 5527659 ~ 5527874 (-) True G71472
TU96407 lncRNA downstream 338148 5490363 ~ 5491941 (-) True G71464
TU96531 lncRNA upstream 24621 5866305 ~ 5866528 (-) True G71554
TU96568 lncRNA upstream 112936 5954620 ~ 5967921 (-) True G71577
TU96623 lncRNA upstream 245155 6086839 ~ 6087111 (-) True G71612
TU96669 lncRNA upstream 312207 6153891 ~ 6178020 (-) True G71636
TU96681 lncRNA upstream 430567 6272251 ~ 6288998 (-) False G71644
XM_022672006.1 mRNA downstream 29365 5770787 ~ 5800724 (-) False LOC103036182
XM_007253618.3 mRNA downstream 31415 5770787 ~ 5798674 (-) True LOC103036182
XM_022672007.1 mRNA downstream 33997 5770787 ~ 5796092 (-) False LOC103036182
XM_007253619.3 mRNA downstream 33997 5770787 ~ 5796092 (-) False LOC103036182
XM_022672005.1 mRNA downstream 234086 5531871 ~ 5596003 (-) False trpc3
XM_022672008.1 mRNA upstream 2957 5844641 ~ 5859370 (-) True LOC103035351
XM_022671905.1 mRNA upstream 170535 6012219 ~ 6036754 (-) True LOC103032061
XM_022672013.1 mRNA upstream 319971 6161655 ~ 6221853 (-) True LOC103043333
XM_007253597.3 mRNA upstream 452000 6293684 ~ 6315841 (-) True hars
XM_007253598.3 mRNA upstream 452000 6293684 ~ 6315832 (-) False hars
TU96400 other downstream 353714 5471666 ~ 5476375 (-) True G71458
trnaw-cca_42 other downstream 906018 4924000 ~ 4924071 (-) True trnaw-cca_42
TU96095 other downstream 945601 4882170 ~ 4884488 (-) True G71235
TU96020 other downstream 1417078 4411948 ~ 4413011 (-) True G71175
TU95798 other downstream 2022990 3769161 ~ 3807099 (-) False LOC103042226
TU96859 other upstream 935555 6777239 ~ 6824756 (-) True G71771
TU96917 other upstream 1215426 7057110 ~ 7057643 (-) True G71826
TU96981 other upstream 1468091 7309775 ~ 7312926 (-) True G71862
TU97555 other upstream 2797854 8639538 ~ 8645601 (-) True G72336
TU97699 other upstream 3324194 9165878 ~ 9174309 (-) True G72449

Expression Profile


XM_007253617.3 Expression in all Baseline Samples

Bar chart with 16 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 60.
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XM_007253617.3 Expression in each Bioproject

Bar chart with 7 bars.
XM_007253617.3 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 250.
End of interactive chart.