RNA id: TU96537


Basic Information

Item Value
RNA id TU96537
length 1791
lncRNA type sense_over
GC content 0.41
exon number 2
gene id LOC103043949
representative False

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 5871090 ~ 5957019 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gtgtgtgtatgggtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaagtgtgcatTTTTATGGGAGAGAGAGCTtgagaaagacagagcgagaaaggagagagagagagagagagagagagagagtgtgtgtggattgTGTAATGACATATTAACCACAAACTGATAACGGTGTGCTTTTCTCTCCGATGAATagggctgtttgtgtgtgtgtgtcagaatgtgtgtgtgtgtgtgtcagtgattGTGTGGGTGGGTGAGTTGTGTAATTACTTGGTAAGGAAGTAGGTTTTATCACTAAAGGACaattcctctttcttttttctgcctGCCGCCGCGGTTCATGCTGAATCCGTATAAAAAGCCTCTGTGCTCTGTTCATTCACTGTCAGAGGAGTGTGGTTATCAtatgagtgtgagagacagtgtgtgtgtatgtgtgtgtgtgtatattagaatgtgtgtgtgtatatataaatatactgtaacttATAAGCATTTACTTTCACAATCTCTAGCTCTTCTACCATGTTTTGCTACTAGTATTTAACAGATTAGTATCAAGTACTCTTCACTTAATACGGGGACGTTTGGAAAAAAGAGACTTTTCAGATGTATTCGCAATGCAGTCTTTGAGACCCCCCCCACCCTTCGTCCCACCCTCGTCCCTCCCTTTGTCCCTTTCTCTggttataaagtaaaaaagccCCCCTAAGCCCATGTCCAGTCGTCCGCTCTACTGCGATGTACTCTGCTGTCTGCTGTTTCGTCTCGCTGGGACTTCTGTGCTGCGGCCTCTTCGCTTTAGGACTCTCCATACTGCCCATTGGATATTAACACCCTGTGAGAAACAGCACCTGGAAAAAGTCAACGGGTCGGAAAAAAGAGAGTCTGTTTCTTGTACGGCCAAAAATCTTGGAAATTTCAGTAAATTGTGggaatttttgttcatttacttctttttttcacATGGTGGAGAAGTTCCCCCGTATGGAAATGTACCGCAGGTCCCGTCCCGTCCAGCTCTGCAaaagactgactgactgaccacCCAACCATCCAGCTCCTCGCGAGAACGTCTGAGGGGATCTGTCTCGTTTTTGTACATACGTACTGTAAGCcgcaaatatttttaacagatGATCATCGTttgttttgatttgatttttcgtattatttatttgtttcttgaactatttatttattccttagtttgtttcactgtttgtttaatttatttactgttgcTGTACATTTCAATTAAGCTCCTGTAAGGTTCGGAAAACGtgtgattttattctgattACGATTAATATGGTTccgatttcttttttctttcctctctgtTGATGTACAGAAGTCGTTCAATTGTGTGAATGATCATATACTTGTTTGAAAAGCCATCCAGGGCTGATAAAGCATGACTGCATGGGTAACTCAAAAATGTAAAGCAAATACAGGCGCGGCTTACCGTGTCCTCACATTTTTAAGGAGAAGTATATTCCCATCGTCATTATTctcaataacaatattcttcttatttattattatgagcTTTCTGCTGGTTTCTTCCACTCTACCCGATCCTCGTTTGGTCGCTCATCGTggtttactttaaatgaaaaactGAAGCGTTTCATGAGTTATTTGTGATTCTATCTCTCGTAATTTTTTCTCGGAAACTGAGTTTTGGCATTAATATGAATTCCTGACCTACAGACAGTGTAAGCATGCCCCATGGGAcaaatctctttttttactcTTGAATAAAATATGCATGAACCTTTTGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96473 lncRNA upstream 44036 5800403 ~ 5859364 (+) False G71518
TU96474 lncRNA upstream 44036 5844617 ~ 5859364 (+) True G71518
TU96492 lncRNA upstream 61697 5828888 ~ 5841703 (+) True G71528
TU96489 lncRNA upstream 74578 5824434 ~ 5828822 (+) True G71527
TU96445 lncRNA upstream 224573 5674801 ~ 5678827 (+) False LOC103037414
TU96551 lncRNA downstream 9535 5966554 ~ 6018103 (+) True G71567
TU96550 lncRNA downstream 55203 6012222 ~ 6014382 (+) True G71566
TU96619 lncRNA downstream 75166 6032185 ~ 6036659 (+) True G71608
TU96622 lncRNA downstream 129555 6086574 ~ 6086987 (+) True G71611
TU96624 lncRNA downstream 196862 6153881 ~ 6157418 (+) True G71613
XM_007253622.3 mRNA upstream 172085 5696919 ~ 5731315 (+) True LOC103037091
XM_015606961.2 mRNA upstream 224526 5672718 ~ 5678874 (+) True LOC103037414
XM_015606960.2 mRNA upstream 224526 5672732 ~ 5678874 (+) False LOC103037414
XM_007253644.3 mRNA upstream 408836 5491422 ~ 5494564 (+) True LOC103044251
XM_007253628.3 mRNA upstream 418236 5480388 ~ 5485164 (+) True LOC103038898
XM_022672012.1 mRNA downstream 5261 5962280 ~ 5987766 (+) True tmem173
XM_007253601.3 mRNA downstream 51542 6008561 ~ 6011401 (+) True LOC103031741
XM_007253600.3 mRNA downstream 315197 6272216 ~ 6291384 (+) True LOC103031423
XM_022672014.1 mRNA downstream 361301 6318320 ~ 6344698 (+) True trappc11
XM_022672015.1 mRNA downstream 361311 6318330 ~ 6344698 (+) False trappc11
TU96351 other upstream 397762 5499908 ~ 5505638 (+) True G71414
LOC111193046 other upstream 923378 4979467 ~ 4980022 (+) True LOC111193046
TU96113 other upstream 923389 4956298 ~ 4980011 (+) True G71247
trnaa-agc_14 other downstream 79783 6036802 ~ 6036874 (+) True trnaa-agc_14
trnaa-agc_15 other downstream 80657 6037676 ~ 6037748 (+) True trnaa-agc_15
TU96736 other downstream 568622 6525641 ~ 6538794 (+) True G71682
TU96877 other downstream 924568 6881587 ~ 6885541 (+) True G71788
TU97487 other downstream 3185880 9142899 ~ 9149419 (+) True G72281

Expression Profile