RNA id: XM_022672011.1


Basic Information

Item Value
RNA id XM_022672011.1
length 3944
RNA type mRNA
GC content 0.47
exon number 13
gene id LOC103043949
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 5871090 ~ 5957019 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctttctctttctatttctttctatCTATACTCTGtcctgtccatccatccatcactccCATCATCTATCTCTCCTCTCTACCTACCTATACTTATCATctctttactgtatatatttcagACCACTCCAGAGTTGCAGCTGCTTTGGCTGCTGTCCTCTTGCACTTTCCTCCCTTCCATCTTTCCTTtcttctctccttcttctttcttcccTCCATCTCCTCGGCGAGCAGAGGCGCAGGGACGCACCGAGtgatgctgctgatgctgcgGCTGCAGCCGGGCcacagcaggagcagcagcagctctccgTGAAGGAGAAGGAGCATCACCAGCATACCACAAGCCCATGAAGATGTCAAACGCAGTCATGGGCTTGAACCCCGCGGATAGGGTGATTAAATcggTCCCCTTCCCACTGAGCCATAGGTTGAGTATGCGGGAGGTGTTCGACTGCGAGGGGAAGCCGCGTGTGGACCTGCTGAAGGCTCACCTCACTAAAGAGGGCCGAGTGGAAGAGCCTGTCGCTCTGCGCATCATAAACGAGGGGGCCGCCATCCTCCGGCAGGAGAAGACCATGCTGGACATTGAGGCCCCTGTTACAGTGTGTGGCGATATCCACGGGCAGTTCTTCGACTTGATGAAGCTGTTTGAAGTTGGAGGCTCGCCAGCAACGACGCGGTATCTCTTTCTAGGGGACTATGTGGACCGAGGCTACTTCAGTATTGAGTGTGTTTTGTATCTTTGGTCGCTGAAAATCCTCTACCCAAAGACGTTATTTCTACTGCGGGGAAACCATGAATGTAGACATTTGACCgaatatttcactttcaaacaagAATGTAAAATAAAGTACTCAGAGCAGGTGTATGACGCATGTATGGATGCGTTCGACTGTCTGCCTCTGGCTGCTCTGATGAATCAGCAGTTTCTGTGCGTGCACGGCGGCCTCTCACCTGAGATACACACGTTAGACGACATCAAGAAGCTGGACCGGTTTAAGGAGCCTCCAGCTTTCGGGCCCATGTGTGACCTGCTGTGGTCAGATCCATTAGAGGACTTTGGCAACGAGAAGTCTCAGGAGTATTTCAGCCACAACACGGTCCGCGGCTGCTCCTACTTCTACAGctaccctgcagtgtgtgagttcctACAGACCAATAACCTTCTCTCAGTCATCAGAGCCCACGAAGCACAGGACGCAGGTTACCGCATGTACAGAAAGAGCCAGACGACAGGCTTCCCCTCCCTCATCACCATCTTCTCTGCTCCCAATTACCTGGAcgtttataataataaagCCGCCGTGCTGAAGTATGAGAATAATGTGATGAACATCCGGCAGTTTAACTGTTCGCCACACCCTTACTGGCTGCCCAACTTCATGGACGTGTTTACCTGGTCTCTGCCCTTCGTAGGAGAGAAAGTGACGGAGATGCTGGTGAACGTGCTCAGTATCTGTTCAGATGATGAACTCATGAATGATGGTGATGAGATCTATGATGCCAATGCTGCAGCAGCCCGTAAAGAGGTGATCAGGAACAAAATCCGCGCCATCGGCAAAATGGCCAAAATGTTCTCAGTCTTGCGtgAGGAGAGTGAGAACGTGCTGACCCTAAAGGGCCTGACCCCGACTGGCATGCTGCCCAGCGGAGTTCTGTCTGGAGGAAAGCAGACCTTACAGAGCGcTATCCGTGGTTTCTCCCCGCAGCACAAGATCAGTAGTTTTGAGGAGGCGAAGGGTCTGGACCGGATTAACGAGCGGATGCCTCCTCGCCGGGACGTGGTCAACAGCGTGGGTCTGTCTATGGGCCGCATGAACATGGCCGAGTCCAACGGCACAGACGACAACAGCAATATCCAGTGACTCCTctactcttcctcctcctcttcctcgtcCTCTTCCTCCTATCTGTCTTCATTtccactctccctctctctatacccCTCTAAACCACCCCTTTCCCTctgttccctctctccctccatctgcACTGCcgctccttctctctttctctctgcagtgGACAGACAGCTGGACGGCTGTGGTGCACAGGGTGGTCCTGAAAGCCCACCAGAGAGCCTCTTTCACACGCATCTCACAATGCAAATTTACAGCTAGAAGAAGGAGCATGTCTTAGGCCTGTGAGCTTCAGAAGAGGGTCTtttcttgtgtgtttgtgtatgtgtgtgtgtgtgtgtgtaagtgtgcatTTTTATGGGAGAGAGAGCTtgagaaagacagagcgagaaaggagagagagagagagagagagagagagagtgtgtgtggattgTGTAATGACATATTAACCACAAACTGATAACGGTGTGCTTTTCTCTCCGATGAATagggctgtttgtgtgtgtgtgtcagaatgtgtgtgtgtgtgtgtcagtgattGTGTGGGTGGGTGAGTTGTGTAATTACTTGGTAAGGAAGTAGGTTTTATCACTAAAGGACaattcctctttcttttttctgcctGCCGCCGCGGTTCATGCTGAATCCGTATAAAAAGCCTCTGTGCTCTGTTCATTCACTGTCAGAGGAGTGTGGTTATCAtatgagtgtgagagacagtgtgtgtgtatgtgtgtgtgtgtatattagaatgtgtgtgtgtatatataaatatactgtaacttATAAGCATTTACTTTCACAATCTCTAGCTCTTCTACCATGTTTTGCTACTAGTATTTAACAGATTAGTATCAAGTACTCTTCACTTAATACGGGGACGTTTGGAAAAAAGAGACTTTTCAGATGTATTCGCAATGCAGTCTTTGAGACCCCCCCCACCCTTCGTCCCACCCTCGTCCCTCCCTTTGTCCCTTTCTCTggttataaagtaaaaaagccCCCCTAAGCCCATGTCCAGTCGTCCGCTCTACTGCGATGTACTCTGCTGTCTGCTGTTTCGTCTCGCTGGGACTTCTGTGCTGCGGCCTCTTCGCTTTAGGACTCTCCATACTGCCCATTGGATATTAACACCCTGTGAGAAACAGCACCTGGAAAAAGTCAACGGGTCGGAAAAAAGAGAGTCTGTTTCTTGTACGGCCAAAAATCTTGGAAATTTCAGTAAATTGTGggaatttttgttcatttacttctttttttcacATGGTGGAGAAGTTCCCCCGTATGGAAATGTACCGCAGGTCCCGTCCCGTCCAGCTCTGCAaaagactgactgactgaccacCCAACCATCCAGCTCCTCGCGAGAACGTCTGAGGGGATCTGTCTCGTTTTTGTACATACGTACTGTAAGCcgcaaatatttttaacagatGATCATCGTttgttttgatttgatttttcgtattatttatttgtttcttgaactatttatttattccttagtttgtttcactgtttgtttaatttatttactgttgcTGTACATTTCAATTAAGCTCCTGTAAGGTTCGGAAAACGtgtgattttattctgattACGATTAATATGGTTccgatttcttttttctttcctctctgtTGATGTACAGAAGTCGTTCAATTGTGTGAATGATCATATACTTGTTTGAAAAGCCATCCAGGGCTGATAAAGCATGACTGCATGGGTAACTCAAAAATGTAAAGCAAATACAGGCGCGGCTTACCGTGTCCTCACATTTTTAAGGAGAAGTATATTCCCATCGTCATTATTctcaataacaatattcttcttatttattattatgagcTTTCTGCTGGTTTCTTCCACTCTACCCGATCCTCGTTTGGTCGCTCATCGTggtttactttaaatgaaaaactGAAGCGTTTCATGAGTTATTTGTGATTCTATCTCTCGTAATTTTTTCTCGGAAACTGAGTTTTGGCATTAATATGAATTCCTGACCTACAGACAGTGTAAGCATGCCCCATGGGAcaaatctctttttttactcTTGAATAAAATATGCATGAACCTTT

Function

GO:

id name namespace
GO:0004721 phosphoprotein phosphatase activity molecular_function

KEGG:

id description
K04348 PPP3C, CNA; serine/threonine-protein phosphatase 2B catalytic subunit

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96473 lncRNA upstream 11887 5800403 ~ 5859364 (+) False G71518
TU96474 lncRNA upstream 11887 5844617 ~ 5859364 (+) True G71518
TU96492 lncRNA upstream 29548 5828888 ~ 5841703 (+) True G71528
TU96489 lncRNA upstream 42429 5824434 ~ 5828822 (+) True G71527
TU96445 lncRNA upstream 192424 5674801 ~ 5678827 (+) False LOC103037414
TU96551 lncRNA downstream 9539 5966554 ~ 6018103 (+) True G71567
TU96550 lncRNA downstream 55207 6012222 ~ 6014382 (+) True G71566
TU96619 lncRNA downstream 75170 6032185 ~ 6036659 (+) True G71608
TU96622 lncRNA downstream 129559 6086574 ~ 6086987 (+) True G71611
TU96624 lncRNA downstream 196866 6153881 ~ 6157418 (+) True G71613
XM_007253622.3 mRNA upstream 139936 5696919 ~ 5731315 (+) True LOC103037091
XM_015606961.2 mRNA upstream 192377 5672718 ~ 5678874 (+) True LOC103037414
XM_015606960.2 mRNA upstream 192377 5672732 ~ 5678874 (+) False LOC103037414
XM_007253644.3 mRNA upstream 376687 5491422 ~ 5494564 (+) True LOC103044251
XM_007253628.3 mRNA upstream 386087 5480388 ~ 5485164 (+) True LOC103038898
XM_022672012.1 mRNA downstream 5265 5962280 ~ 5987766 (+) True tmem173
XM_007253601.3 mRNA downstream 51546 6008561 ~ 6011401 (+) True LOC103031741
XM_007253600.3 mRNA downstream 315201 6272216 ~ 6291384 (+) True LOC103031423
XM_022672014.1 mRNA downstream 361305 6318320 ~ 6344698 (+) True trappc11
XM_022672015.1 mRNA downstream 361315 6318330 ~ 6344698 (+) False trappc11
TU96351 other upstream 365613 5499908 ~ 5505638 (+) True G71414
LOC111193046 other upstream 891229 4979467 ~ 4980022 (+) True LOC111193046
TU96113 other upstream 891240 4956298 ~ 4980011 (+) True G71247
trnaa-agc_14 other downstream 79787 6036802 ~ 6036874 (+) True trnaa-agc_14
trnaa-agc_15 other downstream 80661 6037676 ~ 6037748 (+) True trnaa-agc_15
TU96736 other downstream 568626 6525641 ~ 6538794 (+) True G71682
TU96877 other downstream 924572 6881587 ~ 6885541 (+) True G71788
TU97487 other downstream 3185884 9142899 ~ 9149419 (+) True G72281

Expression Profile