RNA id: TU96551


Basic Information

Item Value
RNA id TU96551
length 3245
lncRNA type read_through
GC content 0.37
exon number 3
gene id G71567
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 5966554 ~ 6018103 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ataaagttttaagagttcagaaatcaatatttggtggaataaccatgttttttaatcacagtttttatgcatcttggcatgttctcctccaccagtcttacacactgcttttggataactttatgcctctcctggtgcaaaaattaaagcaattcagcttggtttgatggcttgtgatcatccatcttccacttgattatattcctgaggttttaagtttggtaaaatcaaagaaactcataatttttaagtggtctcttattttttacagagctgtatattactgGGATATATTAAACAGCAAGTGAACACTTTGAGCTTAGAGGCATTATTAAGTAAGTGGTagtaatgttatggctgactgTCCGACCACTATAAAGATAATTACTTTCATTTGAATGAATAAggaatataagaaatatatattttaaggagCTAATTAATTGTTAAGTATTTTATACattcaaacataaaacatgaCTTAAAAAGTTCTTAGTCAATTTTTACAATATCAGATGCATGTAATGTTTGTacgtgtttttgttttgtttgtgttattGGACCCCTTGAAAATGGAGATGCAACATCTAAAGATGTTCTAGTAATAATATAAACTGTTATCAAAGGGCACTCACTCTGTTCAAAACTATTACCCATATCTTGTACTTAGTACTGATGACATAAATTGTACACCTGTGTACTCTCTTAAGTGTAAACCCTGTGTGTTTTGAAACGCTTATACACGTGTGCGTCtgtgcaggagagagagagagaaaagagagagagagagaaaaggaaagacagGATTTAGGGGGGCAGAGAGCAAAGCCGTAACCTGGATActtacaaaaagagagagaaggaaagcaGGAGAGGCCATGGGGAGACTGTCCTGTAGGAGGACAAACAGcagtgagaaagagacacacgcacacacacacactctcactcgcTTCTGCAACTCAGgccatcaacacacacacagaccatcTTTCACCTACAGGAACATACAAACAAAACTACAAATACACAGACATTCCAGGCttacagacagagctgaagcagACAGAATTTTTGCAAAAGTGATCTACAAGGTGATTTCTGAGTGTCTGGATTTCAGCACACAAAAACAGAAGCATAGCACTTCTAATAATAAAGGAAATATGAAACTGAAACCAGTTAGATTCACaacaatgtataaaaataactgGTCCCAACTAACATTTACTCTTTATTAGCTGTGCTAATAGTGACATTTCGAGAGGCTTCCAGCTGCAGCTTCACAGACAAAGCCCTTGGTTGCTCAGAAGCATTGTGCTGGGTGGAATTGAGGCCTGTGGCTGGATGggagtaatatttaatataatctttaatataaaagctcCAGATAGCCTTAAAAACActactattttctttttttcattttcatagtCCATTTAAATCAATACAGTATAAACCAAATATAGAAAATTAGCactctgtaaaaaaattgataaaaaatggtaaattgAAGTGTATTATAGTATAAATGGATGCATGTATTGTCTCAGTAAAACAagtttttaagttgtttttattaagtttaaagcaacagtcctTTAGAAtgctttcttttaaattaaatgcattaatattttGTGGGGAAGCGACTAAATATTCTAATAAACAGCATCAGTGCGCTTCTGCAAAGCAAACTATATTAAGTCTAATACTGGGTTTGCTTAGAGTTTTTCTGAGCACAACCGCTTTAGCTGGTTACCCAAGCAACCACagtgctgctaatggtgctgtTACAAGAAATACTGTGAACATAGAGATATCAGATTCCCAAAACTCAGTCTTCATCTGCTCATTCACTTATTATTAAACCAGAGAAATGCAAAATTAGAACAGAATAGAGATGGGGAGATTAAACCGAGCACAACAGAATCTGATGAATCCATAAAATTCATCCCGTCTGAAaagatcaatatttttttttagcatgctTAGTGCAATCAAACATTTGCACCAAATACTTAGAGACTGTCTTTTTAGTTAGCACGGGACTCAACTAGCTgtagtttgtttttgtgtgtgtaatttacaGTTACAAGGCTTTTCACACTAATGCAATGGAGTCGATtgactctttttaaaaatgtttcaggACCTCACATTCatatttcaatcaatcaatgacCAAACTCCTTGTTTATAACACCTCTGGCGAAGCTGCAGCTGGATGCTAATAAACATTTGTGGGTGAAAGCAAGCAACGTCACAAAACACGGAGCAAGCTAGGCATCTCTAGCAGCAGAGAATCAGAAGaaagctcacacacacaagctaGTGTTAGTCCACAGCAGGTTATAGACGAACACAGAGACAAGCGCAGGTAAAGGTGGGACAGAAATACAggtgaaacagagagaaagctTGGACTGATCCATGTGATCTGTATGTGTAACATGTCTGTCACTGTATGTGATGAAATCGCTCACGTGCACATTCTGTGAAAGAGGACTCAATGAGTGAATCATGAGGGGGTGCTGGGGTATTGCGCTGGTTGAGAAAGTAGGAGGTAAGGTGTTAAGACTGTACAATTTCCACAAAGACTGACAAATAACACAACCTAAAAACATGGCATAAATAACCACGATGGGCCTGGATTCCCAAAAGCTTTGTGGTAATCAGATTATCTTatctcacagagagagagagagagagagagagagagagaagccacAACTGAGAGAGCAGTTCTAGCACAGCTGACGGTTTTGTTTTGACACAAAGCTGGTTCAAAGCCTCACACTTTAATAATAAGGGTTTCAAATATTAAACTACACTGTTGCTGAAATTGTtacaaatagaaagaaattgAACTAAAATTAGCACTCAAACTCCCTAATTTGTCCATATGATAAACACGGTCATTCCAGTATACAGTGAGGAAATTAAGCATTTGAACACCCTgtgaataatttatttgtgtgttactgctgcaaataagTAAGTATTTGAAAACCTGTGAAAATCAATGTTAATATTTAGTACAGTAGTCTTTGTTTGCGATTATAAAGGTCCTGTAGTTTTTCACCAGGtttgcacacactgcagcagggattTTGGCCCATTCCTCCACACAGATCTTCTCCAGATCAGCCAGGTTTCTGGGCTGTCGCTGAGAAAACAGAGATTGAGCTCCCTTCAAAGATTTTCTACAGTGTTTAGGTCTGGATACTGGCTAGGCCTActtattt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96537 lncRNA upstream 9535 5903400 ~ 5957019 (+) False LOC103043949
TU96473 lncRNA upstream 107190 5800403 ~ 5859364 (+) False G71518
TU96474 lncRNA upstream 107190 5844617 ~ 5859364 (+) True G71518
TU96492 lncRNA upstream 124851 5828888 ~ 5841703 (+) True G71528
TU96489 lncRNA upstream 137732 5824434 ~ 5828822 (+) True G71527
TU96619 lncRNA downstream 14082 6032185 ~ 6036659 (+) True G71608
TU96622 lncRNA downstream 68471 6086574 ~ 6086987 (+) True G71611
TU96624 lncRNA downstream 135778 6153881 ~ 6157418 (+) True G71613
TU96648 lncRNA downstream 327131 6345234 ~ 6345715 (+) True G71628
TU96785 lncRNA downstream 621563 6639666 ~ 6661997 (+) True LOC111193077
XM_022672009.1 mRNA upstream 9539 5871090 ~ 5957015 (+) False LOC103043949
XM_022672011.1 mRNA upstream 9539 5871251 ~ 5957015 (+) True LOC103043949
XM_022672010.1 mRNA upstream 9539 5872593 ~ 5957015 (+) False LOC103043949
XM_007253622.3 mRNA upstream 235239 5696919 ~ 5731315 (+) True LOC103037091
XM_015606961.2 mRNA upstream 287680 5672718 ~ 5678874 (+) True LOC103037414
XM_007253600.3 mRNA downstream 254113 6272216 ~ 6291384 (+) True LOC103031423
XM_022672014.1 mRNA downstream 300217 6318320 ~ 6344698 (+) True trappc11
XM_022672015.1 mRNA downstream 300227 6318330 ~ 6344698 (+) False trappc11
XM_007253596.3 mRNA downstream 335536 6353639 ~ 6372363 (+) True LOC103029834
XM_007253595.3 mRNA downstream 335539 6353642 ~ 6372363 (+) False LOC103029834
TU96351 other upstream 460916 5499908 ~ 5505638 (+) True G71414
LOC111193046 other upstream 986532 4979467 ~ 4980022 (+) True LOC111193046
TU96113 other upstream 986543 4956298 ~ 4980011 (+) True G71247
trnaa-agc_14 other downstream 18699 6036802 ~ 6036874 (+) True trnaa-agc_14
trnaa-agc_15 other downstream 19573 6037676 ~ 6037748 (+) True trnaa-agc_15
TU96736 other downstream 507538 6525641 ~ 6538794 (+) True G71682
TU96877 other downstream 863484 6881587 ~ 6885541 (+) True G71788
TU97487 other downstream 3124796 9142899 ~ 9149419 (+) True G72281

Expression Profile