RNA id: TU96624


Basic Information

Item Value
RNA id TU96624
length 3517
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G71613
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 6153881 ~ 6157418 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATTATAATGGTACACAGCAACAGTGATATcaccctttatttattttattttttttatacacctgATAGGAAACAGAACACGGACCAGAACCTGAATACCAAGAGAAGTGTGAGGAGAGTGGAGGTGGAGAGGAGCGACGGAGCCCCAGAGTCCATAAAAGGTCTCCAGGCCAGGTTGCGAGATCATGTGTCCTGGAACGACGCTACTCTTTCACATAGTTCTTTGAGATCTTTGACCAGCACGCCCTTGTCTCGGTCTGTCCAAAAATGTTAATGATTCATTGTGCATTAGTGCCTATTTCCAGACAGAAACGCTGCCAAGATGAAGAGTCATGTAAACAAATGAATCAGCCCCCCCATTTGACAGAGAGGATCATTTTTAATGGCACTCGTGACGATTAAGTCTTGTCAAACATAACGCTGAATGAAAGCCAATGTCGCCAGTTAATGCTGGCAGTGTGATTTTGTTTCTTGGGCAGAAATAGAAGCTTGGGCTGCCTTTAAATTTCATTAAAGAAAATTGCCTCACTTGATCTCAGAACAACATATAAGAGCAACTTCATCCAAGAACAGCTGAGGTGTGGAGGAGGACGGTGGAGATTGGCTACAGTAGTGTCAGTAGGTAATGGTGTGGGGTAGTTGGTAGTTAATGATTGCCTACAATTGGGTTAATTGGGACAGGTTATTGTGATGTGTAATGGGTATAAAATGATGTGGGTATAGTGGGTATAGTGGATGTAGTGTAGGTATGGGGGTTAGAATGGATACAGTGGAAATGGGTTGAGTAGAAAGTGGATGGAAGTAGTAAAATAAGTAAGGGTCTTGGGATAGGGGTGAGGAAGGGAACAGTTGGAATGTGAAGGTGGAAATGGTAGAAACAGAAACTTGGACTTGAGTTTTGAACAAGTAGGAGAAGTTTATTGAGAGTCGGTATGGGGGAGCTCTGGGCTTGAAGGACAGGAGAGGTCTGGGATTTATAGAGTGAGTACAAAGGGCTTTGGGCTTGATAATGTAGGAGCATAAGGGGTTTGGGCTTGTCTCAAAGTGGGTCCCAGATTGGTGAGTATGGGAGAGCTTTGGGCTTACCTGAAAGTGGTAGAAGAGAGTTTCAGGCTTGACAGAGCTTAAATGAGATCTGGACCTGAAGGGTTTGGGATTGACAGAGTAGGACCTTAAGAGATTTGGGCTCAACTGAGATTTATACCTGCAGGATTTGGGCTTGACTAAAAATTAGAACATATGTGGTTTGGGCTTGACTGAGAATAGATACAGTTGAGCTTTGAGGTGAACAAAAAGTGGAAAAGGAAGAGTTTGTGCATggtagaggagaacatgaagGATCTGGACTTGACTAAGACAACACGGATTTGGGCTTGACTGAGAATGGAAACATGAAAGGTTTGGACTTAATTGAGAGTGTAACCAATATGGGGTTTCAACTAACTGACTGAAAATGAGAATGAACATATACGTAGTATACGTTTGGTAATTCCTTTTTGGGTATTGGGTACAGTATGGTTGTGAGGTAATATCGGGTACAGTATGAGGTTTGGGAAAAATGAATGTAGTGAAGGTGTGTGGGTAGTAAACTGATTTACTAGGGGCTGAAGGTGGATGCAGTATATGGTATGTATATGGTGGGTATGCGGTCAGTGAAGGGTGGTTTAGAGGCACATCTAACACAGTGTGGAGAGACATGCGTGGGTCAAGGCAGCCTGGCCTTTCCCACTCCCTCACTCATAGACACAGGAGCCATCTCTAGGTAAATTATCATCTTTTGTGTGCTATTGTTCagctttttattctgtttttggatTTTGGTCCATCTCAATGATAGGAACATCCTCAGAGTCACATCACAAAATGACCACGGCGACTGATGACGCACTGTGAAATGACCGTGCATTGCACTTGTACAGCTGTCCTTCGTCTGCAGATGTGTGCACAGTCAACAGGGGAGCATGAGTGGCACGGTCCAGTGtcaacacacacaggcacacacagaaagacatacaagaaaaaaagacataGTATAAACTGAGAGAAATGAGAGTAGTAGTTTTACTGATAACAAAGAAATGGCAAAGTTTACATAGActccaaaataaaacagcaacaaaaaaaagaaagaaaagttgAAGAAGACAGTCTAATGCCGTGAGGCCTCaagtagtaaaaaataaagctttttttgtcattaataaataaagaatgtattCTAAGTGCACTCAACTAAAGGGGCTTAAACATGGCCTTTGAGTTTTGGCTTCTTTTGGAGGGCTCTTCATTAGAAAAACATTAGCGGTGTTAATTATGATAATGTAATTTGgagggtgtggagtgtggggtGGAACAGAGAGCCACACAGTCCACTGAGCACACGGCACAGGACTAACTACCGCTGGAGGAcagagagagcacgagagagcgaaagagagtgaagAGAGGGAAACAAAGGAAGCAGAAAGGGAAAGGATCAGTCTGATAGTGTGATATGGTAAAGTTGGTCTGATCCTGCATTCACACTGGCCAGGGACAAATCACTTACATCACCCAAAGTTTGTCTCTCGTGGTAGTGTACTTGACTACAAGTTATCAAGCTATGCATTACTGTCTTTCAAACAGCAGGAACAGAGGCACAAGCACTTATTAGCCTCCCTTCCATGTCTAGAACCACACTGATGTGAAAAGGAACAAAATGTGGTGGGAACAAATGATTCAGAAAGTCTTAGACTGATCTAAAGTATATTTTGGTCCAATGGGTTTGAATCTCGCTTCACGTCATCATCATTCATTTGTATGAACTCGATATATTCATACATGTCTATCCGTCACTATGTTACTAGCCTCTTGTAGCTAAATTGCAGCTACAAATTGCATTTTCCCACAGGAAATGACTGGTCGTTTGTCGCTCTGTCGCCTGCTAGTGTGAATGCAGAGTGAAAagggaaataaaacaaaagagacGAGAGTGAGGCAACGTGGAAAAGCCGTAGACAGCACCTTAAAGAGTTGtagtttgtgtatatgtgtgtgcggGAGTTTGTCAGTGTGTCAGAGAGAAGGGCAAACCTCTGGGCTCATGGTAGTATCTAGCGATGTAGTCAGCCAGTCCTGATTTATTTTGCAGGCTGAAGGCTCCACTACTGAAGCTCATTTCAGTGCTGCTGATGCacagtctatctctctctccctcactgacTTTTTCTTCCCGAATCTTTCGCATGcaatctcttcctctctctcagaaCTCCTAATCCTCTCCCAAGCCTTCTGCCTCTctcgctcttgctctctctctctctgatgcaAACTCAAGCTCCTCACGCCCCCGTCTCTGAGTCCCCCCTTTGCCTCgttgtttttttatctctcttctgttctcttGCTCCAGTctgcatctgtctgtctgtctgtctctcgctttctctaTTGGCACTAAACCCGCAGAGGCCCTGCGCATACACACACCCGCAGATGGATGCCCAAGCTCAGAGACATGGagctaatattaaata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96622 lncRNA upstream 66894 6086574 ~ 6086987 (+) True G71611
TU96619 lncRNA upstream 117222 6032185 ~ 6036659 (+) True G71608
TU96551 lncRNA upstream 135778 5966554 ~ 6018103 (+) True G71567
TU96550 lncRNA upstream 139499 6012222 ~ 6014382 (+) True G71566
TU96537 lncRNA upstream 196862 5903400 ~ 5957019 (+) False LOC103043949
TU96648 lncRNA downstream 187816 6345234 ~ 6345715 (+) True G71628
TU96785 lncRNA downstream 482248 6639666 ~ 6661997 (+) True LOC111193077
TU96786 lncRNA downstream 499142 6656560 ~ 6661997 (+) False LOC111193077
XR_002650233.1 lncRNA downstream 499262 6656680 ~ 6662003 (+) False LOC111193077
TU96826 lncRNA downstream 709630 6867048 ~ 6868404 (+) True G71747
XM_007253601.3 mRNA upstream 142480 6008561 ~ 6011401 (+) True LOC103031741
XM_022672012.1 mRNA upstream 166115 5962280 ~ 5987766 (+) True tmem173
XM_022672009.1 mRNA upstream 196866 5871090 ~ 5957015 (+) False LOC103043949
XM_007253600.3 mRNA downstream 114798 6272216 ~ 6291384 (+) True LOC103031423
XM_022672014.1 mRNA downstream 160902 6318320 ~ 6344698 (+) True trappc11
XM_022672015.1 mRNA downstream 160912 6318330 ~ 6344698 (+) False trappc11
XM_007253596.3 mRNA downstream 196221 6353639 ~ 6372363 (+) True LOC103029834
XM_007253595.3 mRNA downstream 196224 6353642 ~ 6372363 (+) False LOC103029834
trnaa-agc_15 other upstream 116133 6037676 ~ 6037748 (+) True trnaa-agc_15
trnaa-agc_14 other upstream 117007 6036802 ~ 6036874 (+) True trnaa-agc_14
TU96351 other upstream 648243 5499908 ~ 5505638 (+) True G71414
LOC111193046 other upstream 1173859 4979467 ~ 4980022 (+) True LOC111193046
TU96122 other upstream 1185974 4963702 ~ 4967907 (+) True G71249
TU96736 other downstream 368223 6525641 ~ 6538794 (+) True G71682
TU96877 other downstream 724169 6881587 ~ 6885541 (+) True G71788
TU97487 other downstream 2985481 9142899 ~ 9149419 (+) True G72281
TU97933 other downstream 3921161 10078579 ~ 10082140 (+) True G72621
trnar-ucg_4 other downstream 6445934 12603352 ~ 12603424 (+) True trnar-ucg_4

Expression Profile