RNA id: TU96682


Basic Information

Item Value
RNA id TU96682
length 1713
lncRNA type inter_gene
GC content 0.50
exon number 5
gene id G71644
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 6272251 ~ 6291512 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCAAGTTGTCAAACTGacccatcaataaaaaaaaaaaaaacaatatctggAACCCAGTCATGaaccttttttatattagtgtaaatactgacaaaataaagcacaaaaaaataaatccaaaaatactcttttttttttaaacacgaCACAAAACAAACCACAACCAAACCAGTCAATTCAAAAGTGTGAAATCAAACAcatgcaaacaaaaacacaaagaaaatcagGTCTCATGCTGATATGAAAAAAAGTGCAAACAGTACAAACGAAGATACAAcacacaaataatattttttctaattaaaacattataaaacatcatatcaaaagataaaacaaaacatcagGTAATTGAGTAAGAACTGAACCATCTCAGCCATCTCTGATTCAAACACTACATGCTTTCTGAGATCAATACTGAACACAAAACTGGTAATGCATTAAACGCGGGCCGCGACCTTTAGGACTGCTGACACATGGTTTTGATGACCTGCTCAGCAGTGGCCCGCTGGACCTCTTCCTCCATGCTGGAGATGCTGGGGCCGGGCAGAACCTGAACAGACCCACACAGCGGGATGGGCAGCTGGGGGATAATGACCTGTAGTTGAAGTGGAGGAAGCCATCAGGGCCTGTGTGGTGGTAGCGCACGTCATACAGCGGCACACCAATTCCATACAGCTCACAAAGCCACTTTAGCTGGCTCACTGCATCATGGGATGACAAAGAGGGCCTCACTGCAGTCACAGGTGCCATTCCATTTCTCACCTGGGGGCCCGGACTCCCAACAGCCTGTGGGAACTGCTGTTTATACTGAGGAGGTGGAGAAAGCAGAGCATtcaaaggagaaagagagggaggtggaggaggacgaagagaaggaggaggagtaggaagaAGAGGGTCTAGATAATTGGAGAGCTGGGTGGGGCGGTTGATCTGGAAGCGGGGAGGCAGTGGAGAAGGCTTAACTGGAGGTTTCAGACCAGGAGGGTTCAGGGGGTTCTGGTCAAGATGCTCCTCCTGCCTGGACTTGGAGCCACTGGTCATCCATCGCACGGAGATGCAGATGCCCAACTGCTTCTTAAATCCTTGCACCAGCACCTTCTTGGCCATGGAAGCAGCGTAGTGAGAGGAGTAGTGGACGAGTGCACAGACCTCCTTTCCTTTGGGCCCAGCAGCCTTTATAGTGGCTCCCTCAACCCCATCTGAGAGCATCCGGAGGACCATCAGCAGCTCCCCTCGGCCCATGGAGGCGGGCAGATCGGCCAGCCACAGCTGCCTCTTCTCCGTGCTCTTCCTGACCACCAGCCGCACCCCCTCCTGCAGTTGGTAATGGTTCAGGGTCTGGATGGCAGCAGTCGCGCCCGCAGGGGTTCCGTACTTGGCGTACGCGAAGCCGCGGTTCTGCCCACTGAAGTTCATCATGAGGCGAAACTCATAGAGCGGTGCCACGCTCAGGAACAGCGGGATCAGCTGATCCTCGTACACATCCCGCGGAATCTGACTGATAAACACCTCACAGCCTGGACCGGGATGAGGACCTCTCCAGTCAGGAGGAGGACCGCCATATTTCCTCTGGCCGTTGATCTGGGTTAAAGTGATGGAGGTAGTCTTCAGCCATTCTTCCAGAGCTCTCACTCTAAGTGGGTTcagaacCTGTACAACTACTCCCTCCATTTTTGCTCCTTCACTGATTCCAGCTTCTCCTTCAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96669 lncRNA downstream 94231 6153891 ~ 6178020 (-) True G71636
TU96623 lncRNA downstream 185140 6086839 ~ 6087111 (-) True G71612
TU96568 lncRNA downstream 304330 5954620 ~ 5967921 (-) True G71577
TU96531 lncRNA downstream 405723 5866305 ~ 5866528 (-) True G71554
TU96453 lncRNA downstream 592141 5679805 ~ 5680110 (-) True G71501
TU96690 lncRNA upstream 26717 6318229 ~ 6320682 (-) True G71646
TU96708 lncRNA upstream 58191 6349703 ~ 6350020 (-) True G71659
TU96717 lncRNA upstream 77244 6368756 ~ 6374213 (-) True G71665
TU96727 lncRNA upstream 164043 6455555 ~ 6459631 (-) True G71675
TU96758 lncRNA upstream 202119 6493631 ~ 6498298 (-) True G71697
XM_022672013.1 mRNA downstream 50398 6161655 ~ 6221853 (-) True LOC103043333
XM_022671905.1 mRNA downstream 235497 6012219 ~ 6036754 (-) True LOC103032061
XM_022672008.1 mRNA downstream 412881 5844641 ~ 5859370 (-) True LOC103035351
XM_007253616.3 mRNA downstream 430544 5830089 ~ 5841707 (-) False LOC103035656
XM_007253597.3 mRNA upstream 2172 6293684 ~ 6315841 (-) True hars
XM_007253598.3 mRNA upstream 2172 6293684 ~ 6315832 (-) False hars
XM_022672025.1 mRNA upstream 230545 6522057 ~ 6538782 (-) True LOC103036141
XM_022672026.1 mRNA upstream 230545 6522057 ~ 6538781 (-) False LOC103036141
XM_007253587.2 mRNA upstream 279304 6570816 ~ 6583742 (-) True LOC103027842
TU96529 other downstream 430564 5829621 ~ 5841687 (-) True LOC103035656
TU96400 other downstream 795876 5471666 ~ 5476375 (-) True G71458
trnaw-cca_42 other downstream 1348180 4924000 ~ 4924071 (-) True trnaw-cca_42
TU96095 other downstream 1387763 4882170 ~ 4884488 (-) True G71235
TU96020 other downstream 1859240 4411948 ~ 4413011 (-) True G71175
TU96859 other upstream 485727 6777239 ~ 6824756 (-) True G71771
TU96917 other upstream 765598 7057110 ~ 7057643 (-) True G71826
TU96981 other upstream 1018263 7309775 ~ 7312926 (-) True G71862
TU97555 other upstream 2348026 8639538 ~ 8645601 (-) True G72336
TU97699 other upstream 2874366 9165878 ~ 9174309 (-) True G72449

Expression Profile