RNA id: TU96717


Basic Information

Item Value
RNA id TU96717
length 3709
lncRNA type inter_gene
GC content 0.34
exon number 3
gene id G71665
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 6368756 ~ 6374213 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTCATTAaatgctttttctttatttctgtatttcattgattttctacactgtatattaatattaaagacacaaaaacaattaaggggCACATATGAAAttttgtagtaaacaaaaattgggatgagctgattTTCACAGCGTGAAAGAAGagcagtaactattgttcagcacctccaggaactccttcaagaggctgagaaaactattccaggtgactttacctaatgaagacactgagataaatgtgctacttacaataatctaaactataaaacatattctggtctgtttaacactttttcttttttacaaaataattctgcatgtgttgctGTATAGCTTTGATatctttaatgttaaatttacaatgtaaaaaaaaaatcctaaaaagaaagaaaacacattgaatcaGAAGAGGTCatctgactacctgaatatactgaatatagaccaggttatttcatcaatgtattttttcttccctgatgatcacggccatattccaaaatgacaatgccaggattcatggggctggaattgtgaaagagtgattcagggagcatgagatcatcattttcacacatagattgttcaccacagagtccagaccttaacctcactgagaatctttgggatgtgctggatggagaagactttgtgcagcggtcagactctaccatcatcaatgctgcaagagcaacgctggattgaaataaatcttgtgacattgcagaagcttgctGAAACAATACCACAGTTAATGCATGACGCAATCAAAGCTGAAGACGGTCCAGCAAATTATTAGTGagaccttttttttggtcaggcagtgtatataaaaatgaaaatgttaataaagaaacatATAAATAACGAATTCATTTATGTAAGGCTTAAGGTTTTACATAAATAAGGTTCATTATTCGTTacagttttattctatacattacttttattgagtcatttacttgtttttatttatttatttatttatttatttggcagATCTAGTCCTCATAAACTTATAATATAGACCATCCAGTGATGCACAAGAGTAAAACCTTCTCCAGTTCAAGCCTAAAGCACTTTCATCAAGCCATTTAAATTAACTAAACCAAAGTGTTTAGCCACCCCAACAAATATCCTGAATGATGGAGACACCCACATGACTATCATACTTAGTCACTGCAGCTCAGCAGTAGTGATTCAGATAAGTTTCCAGTAGCATTCTGTTTAATTTTCaacaacacttaaaaaaataaacactccaAGTGGCTCAAAATCACTTCACAATGTAGTAAGCCTCcctttatttacaatataacaatagaagtgttcattgttcattgttCATTTCAATCCTATATCAGGTCAATAATGAACAGCACAGTAAAAAACAAACTCTCACCAATTTAAAAATCACATCTTTTCACAATGTTAACAGTGTTACCCTGGATTTACAACACAAattcaattataaaaaataaatcaaaagacATAGAAACAGGCCTTAGTACAAGTATGACCATTTTAAACCATAAAACTTGTGCACGTCAGTACAGCTCACATGACATAACATGACATTTATGACACATTTGGTGCGCACCTTCAGCATCAGTATGAACAATGGTGCCTAGTTTTAAGAGTAAACCTTATTCCATTGGAAAAATACTGTCTgcatacactgcaaaaagtaaTACATTAAGTTTAACAGATTGTAATATGGTGTGCAAAGCATCtccacacaaataaaacattatattatcACACCACAGTCATTACCAGTAAGTAAGAAAGTAAACAGAAGTGCAAAACTGTGTGgaagACTTAATATGGTCTATTTAAGACTTCTATAATGAATATAAGACCATATAATGATTCACACATTTGAATGTCAATCTAAATGTATTGCTTTTTTCAGTGTACCAAAGTCAAGTTTTATACTATCTACGTATGAGGTATGTAGTGTACATGGAATCACACAGCTGGCGGAAGCTTGTGTGCCTTCTCAGTCTTACAGCTTCTTCTTGAACATGCTGGTCTACAGCAGCCACAGCACCTGGGGAGGACAGTTAAGAGTCTGCACTTGCGAGAGGTCCTCAGGCAGGGGCGAGCCTCGAGTTTCTGGCATCAGAATGCTCAGCAGCCCAGCTAACACGGTCAGCGCCCCCATCAGAATGTAGGGCAGGATCCGATCATAGTGACCTGCAGGGTTAGCACAGTGTTACTGTAGCAGAAGCTGCACCAGGTCCAGCAGATACAGCACCCAGAAACACTAATTTACCAGCTTAATGAAGGCATTGAGTGAACAAACAATACTAGATAAATGTGTGCTAATGGGAAATACTGTAGTAGCTCTTTTAATGCCTGATTTTAGTGACAGCATATTTGAGACAACCATAACAACTAGATGTGGTCTGAGTTAAGCGTAAGTACATACCAGTAGTTTTACGATGCGAACTAGTGAAAATTATTTTCCTGTTAGCTACCTTAgcctttttgcatttttatgtattctattaaaaatgcttataaaatacacaaaactataaaaaatataggttaattgtgttatattcatttgtcaggaacagcaatagtGTTCCCGGGTCAGTTTtacctggtgcatgtttaattatccaaaagatgtgtGAAACCtttattattctatcaatatttaatgcagtggtgttccttacctctaacaggtaatggttcagttaagataattcacttgtttttaggataattcacttttggttttagttgttgtttttgcagggggttgcaaatatgtgagatcaaccatttttatattatatgttgattacattaATTAAGGCAAGTAGAAGAAGTTTCattctgaaaaaatacttttaacaatttttctagatcttcaaactttaaaaacgagtcaatttgacccgtaacataacaggagggttaaaatgaCCAAAGCCAAGAATTTATGTAAAGTTTAAAGTCACAGTCGCATAAAAAAACTCAAAGATATCACTTCTTTACCTTATAATGAAATTTAGTgaaaaaagtctgaaagtcaagttacagtattttagagcatttctattgttcattatgttctatttgtttatcATGAAATACAGTGTACAGAGCCTATgccataattacataatcataaAAAGTGAGATACAAAAGGTTTGTCCAATATATATCCCATCCtaaaactgtatatttaattttattaaccaAAATATATGAGATTAATTCTCAACATGATACAGTTTAAGGCAAGTGACACAGTTTTTAGGTATTTGCATGATGCTAATTTCTATACATAGTTGTTAGCTAGTCACATCAGACTCaaaactgcagtttaaaacTAAAGGAGAAATGTCTCAACCAAATGCGCCCGCCTGTGTAAAACAGTGAAAATGATTTTCACAAGACATTGTGGTGTGAATGCTGGTTCTTCAGTGAAAAAAAGCTCTGTCGTCAGCCCAGAGGCAGCTCTAATCTGATAATTGTAGGGTTTTGGGTTTGAGTTTGGGGTGCATGTGTTGTAATGTCATAACAAGATTACCTGAAACCAAAAGCGTCTACCTACAGAAGAGCGtcaggtttcttttttttgttcattaacAACAACCTAATCCTTCAATCCTACAAATGATGtcactttaaatgtaaaaaataaaaactatagtAAACTAAacttcacaataataa

Function

GO:

id name namespace
GO:0031667 response to nutrient levels biological_process
GO:0009991 response to extracellular stimulus biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96708 lncRNA downstream 18736 6349703 ~ 6350020 (-) True G71659
TU96690 lncRNA downstream 48074 6318229 ~ 6320682 (-) True G71646
TU96682 lncRNA downstream 77244 6272251 ~ 6291512 (-) True G71644
TU96681 lncRNA downstream 79758 6272251 ~ 6288998 (-) False G71644
TU96669 lncRNA downstream 190736 6153891 ~ 6178020 (-) True G71636
TU96727 lncRNA upstream 81342 6455555 ~ 6459631 (-) True G71675
TU96758 lncRNA upstream 119418 6493631 ~ 6498298 (-) True G71697
TU96767 lncRNA upstream 186911 6561124 ~ 6566115 (-) True G71704
TU96771 lncRNA upstream 231058 6605271 ~ 6612945 (-) True G71708
TU96776 lncRNA upstream 252854 6627067 ~ 6633649 (-) True G71712
XM_007253597.3 mRNA downstream 52915 6293684 ~ 6315841 (-) True hars
XM_007253598.3 mRNA downstream 52924 6293684 ~ 6315832 (-) False hars
XM_022672013.1 mRNA downstream 146903 6161655 ~ 6221853 (-) True LOC103043333
XM_022671905.1 mRNA downstream 332002 6012219 ~ 6036754 (-) True LOC103032061
XM_022672008.1 mRNA downstream 509386 5844641 ~ 5859370 (-) True LOC103035351
XM_022672025.1 mRNA upstream 147844 6522057 ~ 6538782 (-) True LOC103036141
XM_022672026.1 mRNA upstream 147844 6522057 ~ 6538781 (-) False LOC103036141
XM_007253587.2 mRNA upstream 196603 6570816 ~ 6583742 (-) True LOC103027842
XM_007253585.3 mRNA upstream 211461 6585674 ~ 6593124 (-) True LOC103026932
XM_007253582.3 mRNA upstream 489811 6864024 ~ 6868262 (-) True LOC103025929
TU96529 other downstream 527069 5829621 ~ 5841687 (-) True LOC103035656
TU96400 other downstream 892381 5471666 ~ 5476375 (-) True G71458
trnaw-cca_42 other downstream 1444685 4924000 ~ 4924071 (-) True trnaw-cca_42
TU96095 other downstream 1484268 4882170 ~ 4884488 (-) True G71235
TU96020 other downstream 1955745 4411948 ~ 4413011 (-) True G71175
TU96859 other upstream 403026 6777239 ~ 6824756 (-) True G71771
TU96917 other upstream 682897 7057110 ~ 7057643 (-) True G71826
TU96981 other upstream 935562 7309775 ~ 7312926 (-) True G71862
TU97555 other upstream 2265325 8639538 ~ 8645601 (-) True G72336
TU97699 other upstream 2791665 9165878 ~ 9174309 (-) True G72449

Expression Profile