RNA id: TU96758


Basic Information

Item Value
RNA id TU96758
length 1222
lncRNA type inter_gene
GC content 0.49
exon number 6
gene id G71697
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 6493631 ~ 6498298 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

acttttatggagatgttgatttcattttccagcaggacttggcacactgccaaaagtatcaattgatcttatgtaatattctaattctcTGAGACActggtttttgggttttcattgtctgtgagccataatcatcaacaaaaacattttcattacatttctgaaataaagaaaacaacttttcaatgatattcaaattgtTTAATATGTacctgtatttattaattaactttatttaagattttttgcattttgcagtgTAGTGTACAAGGGCAGCAGAAGGGATGCATGCTAGGCCCATAAGCAAGGCAGTCTTGACTCCTGGGTTCACCTAGCTGCCTGTATAATGGATTGATCATACTTCTGACTTTAACATAAAGGTTTTGTGTTGATCCTCCTCTCACCTCTGCCTCCTTCATGCTGATGATCTTCACTCCACACTCCTGGCCTCGAGCCACCAGCGCTGCATCAATCTCCTCCATTACGATCAGCATCCGCAATGAGTGAGCCTTTCCTGATACGCCATCCAGCAGTAGACCGGCCTTCACCGCCACATCACACACCACCGTGGAGATaccagTCTTCTCCATGATGTAGTCGATGGCCTCAGCGCCCAGCGTGTCGTACAGAGGAACGGCTACCAGCGAGTACGTGTAGCAGGCCAGCTCTGTAATGGTCCACTCTGGTCTGTTCTGAGCAAAGATGCCGATGTACTGGTCAGTGTTTTTTGAGTGGCCACTGTGCAGCAGTGCTGAACCCAGGTTTGCTGCTCTTTCTGCAACCTCTGAGTAGGACAGCCACTCATAAGGCTTCTTTGGCTTTCTTGCCCCTAAGCATCGTCCATTATTGGACACCCTCATGCCTCTGGTGAAGCACTCGTACATGGTTGTAGCATCATCATAGTAAAAAGACAAAAGTGCTCCGTCCTCCATTAGTGCAGACATCCGGGCAAACTCCTCCCCCGGCACAGGCAGAGACTGCATGTGCAGGTCACACGGCGGTTTCAGGGCTTTGGGCCGCGTGGCGTACAGGTACGTAGTGACCGCCGCGAAGGCCCCCACTCCCACCAGGGTCCGGGTGGACAGGCTGCGGACATACTGCCGAACCTCGTCCAGCTCAGGCAGACGCAGCTGCTTCAACAGCTCCTGAGCCTGCATGTCTGTGTTCTAGTGGATctgtggagaaagagagagagagagagtgcaacaAGGTTCAAGATTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96727 lncRNA downstream 34000 6455555 ~ 6459631 (-) True G71675
TU96717 lncRNA downstream 119418 6368756 ~ 6374213 (-) True G71665
TU96708 lncRNA downstream 143611 6349703 ~ 6350020 (-) True G71659
TU96690 lncRNA downstream 172949 6318229 ~ 6320682 (-) True G71646
TU96682 lncRNA downstream 202119 6272251 ~ 6291512 (-) True G71644
TU96767 lncRNA upstream 62826 6561124 ~ 6566115 (-) True G71704
TU96771 lncRNA upstream 106973 6605271 ~ 6612945 (-) True G71708
TU96776 lncRNA upstream 128769 6627067 ~ 6633649 (-) True G71712
TU96836 lncRNA upstream 215843 6714141 ~ 6732589 (-) True G71755
TU96852 lncRNA upstream 257134 6755432 ~ 6863292 (-) True G71766
XM_007253597.3 mRNA downstream 177790 6293684 ~ 6315841 (-) True hars
XM_007253598.3 mRNA downstream 177799 6293684 ~ 6315832 (-) False hars
XM_022672013.1 mRNA downstream 271778 6161655 ~ 6221853 (-) True LOC103043333
XM_022671905.1 mRNA downstream 456877 6012219 ~ 6036754 (-) True LOC103032061
XM_022672008.1 mRNA downstream 634261 5844641 ~ 5859370 (-) True LOC103035351
XM_022672025.1 mRNA upstream 23759 6522057 ~ 6538782 (-) True LOC103036141
XM_022672026.1 mRNA upstream 23759 6522057 ~ 6538781 (-) False LOC103036141
XM_007253587.2 mRNA upstream 72518 6570816 ~ 6583742 (-) True LOC103027842
XM_007253585.3 mRNA upstream 87376 6585674 ~ 6593124 (-) True LOC103026932
XM_007253582.3 mRNA upstream 365726 6864024 ~ 6868262 (-) True LOC103025929
TU96529 other downstream 651944 5829621 ~ 5841687 (-) True LOC103035656
TU96400 other downstream 1017256 5471666 ~ 5476375 (-) True G71458
trnaw-cca_42 other downstream 1569560 4924000 ~ 4924071 (-) True trnaw-cca_42
TU96095 other downstream 1609143 4882170 ~ 4884488 (-) True G71235
TU96020 other downstream 2080620 4411948 ~ 4413011 (-) True G71175
TU96859 other upstream 278941 6777239 ~ 6824756 (-) True G71771
TU96917 other upstream 558812 7057110 ~ 7057643 (-) True G71826
TU96981 other upstream 811477 7309775 ~ 7312926 (-) True G71862
TU97555 other upstream 2141240 8639538 ~ 8645601 (-) True G72336
TU97699 other upstream 2667580 9165878 ~ 9174309 (-) True G72449

Expression Profile