RNA id: TU96776


Basic Information

Item Value
RNA id TU96776
length 1994
lncRNA type inter_gene
GC content 0.41
exon number 5
gene id G71712
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 6627067 ~ 6633649 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTTCTCATTCTTGATCATAAGAGTAAAACATTCcacacaatacaaaaataaatacacactacAGAGACTTCTCTGCATgtagtctttttttctttataaaaatgaCAGATTAGTAAAGCACAGTGAAGAAGAGCTATATTTGAAAAACCTCCTGTTTAAACGTTTAAAAGATAATACAGTATTAGAAGGCAGTTCACAGTCTTTAATGATAGATCTCTTTTTGACAGCTGGTGAAAAACATTGTATGTAATATtgtatgtctttctctctcacaaacacacacacacacacacacacacacacacaatatacaaaaGTGCAACACAATCATACACACGCACATTCTCTCACAATGATGTCCCCTTCTGGCATTCTTCTTCActcttctgtttgtttatgcttTGACCTCCATTAATGCCccgtttctctttttctcctgatTGGTTACCACAGTCCGTATTCTCAGAGGGTTTTTTTGCTTCTTTCTGCTCGTCTGGGAGCTGGAGGAACTGGGGCAGCTCCAGCTGCTCTTTGGTCAGTAAACCACGCTGGTCATCCACCCTACTGCACTGAGCTCGGTTCAGCATCTCCACCAGACCATCCATTTCATGCATTCTTCTGGGCTTGGCACTCGTTCTGGCCACGTCTGGAGCTGGACCTGTTCTCACCTCACCAGCATTTTTGACTCGGTCCAGACAGAGGGTCTTGTTGGCCAGACGTAAGACGCTGGTGCTCAAGTTTAACGGTTCTTTTGATCCATTcatagTGACGACAACGTCCTGCGGTCGGAGGTTGTGTTTCTGGAGAAAAGGCGTGATAGCGTCTCCCACAGTTTTACTAGACTTTGCCATGATTCCTGATGTCTTCCCTGTGAACACGACCTCCAGCGTAAATGTCACTTTGAGTTCCAGGTGGACTTGCTGATCCCGGAGTATAGAACTGTCCTGGTCTAAAGAGAGAGGCTGCaacagaaaataacaaatgattacacacaaacacaaacacctcAGCATCCCATACAACGACCCAGTTACACAAaactataccacagttagttccaaccctgcaatgtgctgagaggcattttatgagtgccattatcagccggtaatgcactgtaaccgaagctctccttGTATttctccaccacatacaggtaaactagcaatgatgcagtgcttacaaaccaaatacaaaccaaatgtgatGCCACTGTACACCACTGGAagccgctggatcccatagaggcacagtgcagaaacgccaTGTCTCGAATAGGCAGCGCAGGCAAAGACgcggtcccacaaataaataagcccagcgattcgaaaaaacacattattacacatattatCAGCCactaatatcaggttaagagttgttattattaaaataaaagcatatgtctatatattttccagttaatatagtgtattttaagctgaatataATGTGGCCGAAAATAGGGGATCCTTGTAATTCTGCAGGTCTTACCATTGGGGGGGTAAGCaaggtaaacaaaactttaattcttaaaaaaaaaacattttctttcaaagtcaaacgagccttggactttactcacccaaataaacagttttcaggagagaaatctgtgtgattAAAGCTCtaacgtttatttacagtaagcttagatttccacaatttttacTGAAACGGACGAAAATAGAAGCCACCAcgctaacctagcaacaatgcagcgcttacagcAATGGAACAATTTTAACACGCatagtgtttataaccaaacaaaatctcaaaaatctttcaataaaagagtgataatggaactgtggtataatcgcaataatacactcgaggttcgtgctatgtCTCAAGcatctgtgtatttttttttcttataatttttcccattttttctccccaatttacacggccaattacccaacccactcattaggactccccctattactagtaatgccccaacacaccaggagggtgaagactag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96771 lncRNA downstream 14122 6605271 ~ 6612945 (-) True G71708
TU96767 lncRNA downstream 60952 6561124 ~ 6566115 (-) True G71704
TU96758 lncRNA downstream 128769 6493631 ~ 6498298 (-) True G71697
TU96727 lncRNA downstream 167436 6455555 ~ 6459631 (-) True G71675
TU96717 lncRNA downstream 252854 6368756 ~ 6374213 (-) True G71665
TU96836 lncRNA upstream 80492 6714141 ~ 6732589 (-) True G71755
TU96852 lncRNA upstream 121783 6755432 ~ 6863292 (-) True G71766
TU96851 lncRNA upstream 153871 6787520 ~ 6863292 (-) False G71766
TU96879 lncRNA upstream 247883 6881532 ~ 6885591 (-) True G71790
TU96882 lncRNA upstream 277765 6911414 ~ 6911709 (-) True G71793
XM_007253585.3 mRNA downstream 33943 6585674 ~ 6593124 (-) True LOC103026932
XM_007253587.2 mRNA downstream 43325 6570816 ~ 6583742 (-) True LOC103027842
XM_022672025.1 mRNA downstream 88285 6522057 ~ 6538782 (-) True LOC103036141
XM_022672026.1 mRNA downstream 88286 6522057 ~ 6538781 (-) False LOC103036141
XM_007253598.3 mRNA downstream 311235 6293684 ~ 6315832 (-) False hars
XM_007253582.3 mRNA upstream 230375 6864024 ~ 6868262 (-) True LOC103025929
XM_007253580.3 mRNA upstream 315927 6949576 ~ 6956193 (-) True LOC103025318
XM_007253579.3 mRNA upstream 351569 6985218 ~ 7006934 (-) True LOC103024994
XM_007253573.2 mRNA upstream 627332 7260981 ~ 7265921 (-) True LOC103022894
XM_007258580.3 mRNA upstream 791034 7424683 ~ 7444873 (-) False kif3a
TU96529 other downstream 785380 5829621 ~ 5841687 (-) True LOC103035656
TU96400 other downstream 1150692 5471666 ~ 5476375 (-) True G71458
trnaw-cca_42 other downstream 1702996 4924000 ~ 4924071 (-) True trnaw-cca_42
TU96095 other downstream 1742579 4882170 ~ 4884488 (-) True G71235
TU96020 other downstream 2214056 4411948 ~ 4413011 (-) True G71175
TU96859 other upstream 143590 6777239 ~ 6824756 (-) True G71771
TU96917 other upstream 423461 7057110 ~ 7057643 (-) True G71826
TU96981 other upstream 676126 7309775 ~ 7312926 (-) True G71862
TU97555 other upstream 2005889 8639538 ~ 8645601 (-) True G72336
TU97699 other upstream 2532229 9165878 ~ 9174309 (-) True G72449

Expression Profile