RNA id: XR_002650233.1


Basic Information

Item Value
RNA id XR_002650233.1
length 990
lncRNA type inter_gene
GC content 0.47
exon number 5
gene id LOC111193077
representative False

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 6639666 ~ 6662003 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGACCCAGGCTCTACATGGTTGTCTTGCTGGTATTGGTACCCACTGGCATTCAGATCAGGAGatcaagcaaacacacacacatagatttGTGTGTAGAAGGCTGACAGACAGGAGCTCAGAGTGAGAGTGATAAAGCTCCCCACAGCCGCCCTGCACCACACCGCACCAACGCCAACATGGAGCAGAAGacaacCACGACTCAGAAGCACATGGTGAAAAGCAGGTCCAAGTCTACTGAAGAAATCCAGCAAGCTAAGAAGGCCTTCCACATTCCCCAGAAGTCTCTTCCTGGAGGATCAGAGTTAGAAAAAGTGAAGGAAAGCCCTGAAGAATCTGAAACTCCTGCGTCGTCATCAGAGGAGCTGAAGTAACCCTTATAATTCACAACCTGGAGCCACTACATATCATACACTCATTCACACCACACAATATCCACCATGAATTCCCCAGAAACCTCACTCCAGAACATCACAACATGCTGTTACTTCACTCTTCAAGCTGgttaagctggttgaccagcctGGCTCTTGACTTGTAGGAAACTCAATAACTCCATTATGACCAAGCTGATTGACCTCCATGATCCTCATGcccaagctggtcaaccagtatGGTGATGCTAGTTGACGAGCTTGCCCAATAGCCCAATCAGTGTGACCATGCTAGTCAACCAGGACACAAACCTGGCTTAACACTACGTTATATGCTTTTGCCTGGATGCCCAACCAGCTTTTTAACCACCTCaaccatctaaaaccagctaccaCCAGAAGCTGGGCTTAAACTGGGTTTGTCCGCAGGGATTTCCTACAGAGGCAGGTCAGATGCACACGTCTCCATGCTGTGCTGTCATATCAACTGAATGTGTTTGTgcaataaaaagcagtttttggTGAGTGTGTGTCCACATGAAAGTAACATATTCTGTAATATGTTGTCAATATCAGGGCTCAGAGATGGAATAAAGAATTGATTCACTCCAAGCAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96648 lncRNA upstream 310965 6345234 ~ 6345715 (+) True G71628
TU96624 lncRNA upstream 499262 6153881 ~ 6157418 (+) True G71613
TU96622 lncRNA upstream 569693 6086574 ~ 6086987 (+) True G71611
TU96619 lncRNA upstream 620021 6032185 ~ 6036659 (+) True G71608
TU96550 lncRNA upstream 642298 6012222 ~ 6014382 (+) True G71566
TU96826 lncRNA downstream 205045 6867048 ~ 6868404 (+) True G71747
TU96876 lncRNA downstream 210145 6872148 ~ 6872364 (+) True G71787
TU96898 lncRNA downstream 391020 7053023 ~ 7053324 (+) True G71808
TU96900 lncRNA downstream 395731 7057734 ~ 7058275 (+) True G71810
TU96894 lncRNA downstream 399689 7061692 ~ 7100725 (+) True G71805
XM_022672027.1 mRNA upstream 22805 6605304 ~ 6633875 (+) False LOC103026234
XM_022672028.1 mRNA upstream 22805 6608340 ~ 6633875 (+) True LOC103026234
XM_007253586.3 mRNA upstream 96945 6541416 ~ 6559735 (+) True LOC103027224
XM_022672024.1 mRNA upstream 136209 6509961 ~ 6520471 (+) True LOC103042719
XM_022672020.1 mRNA upstream 147662 6487253 ~ 6509018 (+) True LOC103043030
XM_022672030.1 mRNA downstream 16593 6678596 ~ 6719028 (+) True LOC103042411
XM_007253581.3 mRNA downstream 271387 6933390 ~ 6940362 (+) True bnip1
XM_007253575.3 mRNA downstream 477033 7139036 ~ 7173548 (+) True LOC103023840
XM_007253577.3 mRNA downstream 477033 7139036 ~ 7173548 (+) False LOC103023840
XM_022672032.1 mRNA downstream 477033 7139036 ~ 7173548 (+) False LOC103023840
TU96736 other upstream 117886 6525641 ~ 6538794 (+) True G71682
trnaa-agc_15 other upstream 618932 6037676 ~ 6037748 (+) True trnaa-agc_15
trnaa-agc_14 other upstream 619806 6036802 ~ 6036874 (+) True trnaa-agc_14
TU96351 other upstream 1151042 5499908 ~ 5505638 (+) True G71414
LOC111193046 other upstream 1676658 4979467 ~ 4980022 (+) True LOC111193046
TU96877 other downstream 219584 6881587 ~ 6885541 (+) True G71788
TU97487 other downstream 2480896 9142899 ~ 9149419 (+) True G72281
TU97933 other downstream 3416576 10078579 ~ 10082140 (+) True G72621
trnar-ucg_4 other downstream 5941349 12603352 ~ 12603424 (+) True trnar-ucg_4
XR_002650241.1 other downstream 6209481 12871484 ~ 12897931 (+) False LOC103043719

Expression Profile