RNA id: TU96826


Basic Information

Item Value
RNA id TU96826
length 1357
lncRNA type inter_gene
GC content 0.60
exon number 1
gene id G71747
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 6867048 ~ 6868404 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGGCCGCCGCTATGGTGCCGTTCTGCGCCGCGCACACGGTGGCCGAGCGCTGCTTGGCCACGCGGTAGATCTTGCAGTAGACGGTGACCATGATGAAGCCGGGCGCGAAGAAGGACACGAGCGCGGAGGAGAGGATGTACCACGGCTCCTCGTTCAGCAGGCACTCTCCCTCGCCGTGGCGCGTGAGCACGATGGGCGGGAAGGAGATGACAGCCGACACCAGCCACACGACGGCGATGGCGCAGCGCACGCGCCTCGGCGTGCGCTTTAGGTTGTAGCGCACGGCGCGCGTCACCGACCAGTAGCGGTCAAGGCTGATGGCGCACAGGTGCACGATGGACGAGGTGCAGAAGAGCACGTCCAGCGCCAGGTAGAGCGAGCACCACACGCTGCCGAAGTACCAGTAGCCCATCACCTCGTTGGCGAGCGAGAACGGGATCACAAGCGCGGCCACGAGCACGTCCGCGCACGCCAGGGACACGAGAAAGAGGTTCTGGGGGGCGCGAAGGGCACGGCTCGTCAGCACGGCCACGATCACCAGCGCGTTCCCGACGATGGTCAGGAGGATGAGGAGCGACACAACGAGGATGATGAAGGCTGCGGACACGTCCGCGTGCGGCCACGGCCGCGCGGTTGTGTTGGAGAAGGACAAGCCCTCCGTGAGCCCCCCATGGCCACTACTGTCGGGGCTGCTGGTAGTGCTAGCGGTGGTGGAGTCATGCGTGGATGCATTGGAGTGCGTCAAGTCCATGATGCGCGCATCGTCTCCAGTGgatataaatagatagatagagagataggtAAGTGAGTAGTCTGGATGGTGAACCACTCGAGCTCTCCGGCGCGCGCGGACAAACCCAAGGCGCGAGCACACGGTTCACACTCTAGTCAGGATTAATGATGGTCGACATAGTGGTGGTCCAAGAAATAATCCACGAtggaaaaaacatataaaagagataaaagaggGACTGAGCTTCATCCGAGCGCGGGAATGTcgcttttttcctttctttgatCCTGCACGCTTTTATCTTCCCTCTCTTGCACGCGCGCTGTCTGTCAGCCTGTCCGTCACTCCAGTGTCGCGCGCCTCGCCAAACTCGCGCTGCTCTCCGGATGAAATGTTGGAATGTGCGCTTGAGAGATAGCGGGGTGGTGACGTCACGCAGGACAGcccacttccacacacacacatacacacacaaacacacacacacacacacacacacacacacagccacacgcAGGCGGGTGGGCGCGcgcacacacaggcacaaacgTAGACGcgcacatactgtatgtatacacacccacacacatggCTCACtcgtcacaaaaaaaaacatagacgCGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002650233.1 lncRNA upstream 205045 6656680 ~ 6662003 (+) False LOC111193077
TU96785 lncRNA upstream 205051 6639666 ~ 6661997 (+) True LOC111193077
TU96786 lncRNA upstream 205051 6656560 ~ 6661997 (+) False LOC111193077
TU96648 lncRNA upstream 521333 6345234 ~ 6345715 (+) True G71628
TU96624 lncRNA upstream 709630 6153881 ~ 6157418 (+) True G71613
TU96876 lncRNA downstream 3744 6872148 ~ 6872364 (+) True G71787
TU96898 lncRNA downstream 184619 7053023 ~ 7053324 (+) True G71808
TU96900 lncRNA downstream 189330 7057734 ~ 7058275 (+) True G71810
TU96894 lncRNA downstream 193288 7061692 ~ 7100725 (+) True G71805
TU96963 lncRNA downstream 437755 7306159 ~ 7306542 (+) True G71858
XM_022672030.1 mRNA upstream 148020 6678596 ~ 6719028 (+) True LOC103042411
XM_022672027.1 mRNA upstream 233173 6605304 ~ 6633875 (+) False LOC103026234
XM_022672028.1 mRNA upstream 233173 6608340 ~ 6633875 (+) True LOC103026234
XM_007253586.3 mRNA upstream 307313 6541416 ~ 6559735 (+) True LOC103027224
XM_022672024.1 mRNA upstream 346577 6509961 ~ 6520471 (+) True LOC103042719
XM_007253581.3 mRNA downstream 64986 6933390 ~ 6940362 (+) True bnip1
XM_007253575.3 mRNA downstream 270632 7139036 ~ 7173548 (+) True LOC103023840
XM_007253577.3 mRNA downstream 270632 7139036 ~ 7173548 (+) False LOC103023840
XM_022672032.1 mRNA downstream 270632 7139036 ~ 7173548 (+) False LOC103023840
XM_007253576.3 mRNA downstream 270632 7139036 ~ 7173548 (+) False LOC103023840
TU96736 other upstream 328254 6525641 ~ 6538794 (+) True G71682
trnaa-agc_15 other upstream 829300 6037676 ~ 6037748 (+) True trnaa-agc_15
trnaa-agc_14 other upstream 830174 6036802 ~ 6036874 (+) True trnaa-agc_14
TU96351 other upstream 1361410 5499908 ~ 5505638 (+) True G71414
LOC111193046 other upstream 1887026 4979467 ~ 4980022 (+) True LOC111193046
TU96877 other downstream 13183 6881587 ~ 6885541 (+) True G71788
TU97487 other downstream 2274495 9142899 ~ 9149419 (+) True G72281
TU97933 other downstream 3210175 10078579 ~ 10082140 (+) True G72621
trnar-ucg_4 other downstream 5734948 12603352 ~ 12603424 (+) True trnar-ucg_4
XR_002650241.1 other downstream 6003080 12871484 ~ 12897931 (+) False LOC103043719

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00037774 True 1248 mRNA 0.54 1 NC_007132.7 32820175 ~ 32821422 (+)
grasscarp (Ctenopharyngodon idella) CI01000169_01038714_01039940.mRNA True 1758 mRNA 0.54 1 CI01000169 1038660 ~ 1040417 (-)